PANKAJ TRIVEDI
@PankajTri29
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Are you interested in using synthetic approaches to promote arbuscular mycorrhiza symbiosis? Then our PostDoc position may be for you:
jobs.mpimp-golm.mpg.de
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The unique architecture of umbrella toxins permits a two-tiered molecular bet-hedging strategy for interbacterial antagonism https://t.co/vuqhIzpAxB
cell.com
Umbrella toxin particles produced by Actinobacteria contain five spokes tipped with variable lectin domains. Here, Zhao et al. show that these lectins mediate species-specific binding to a previously...
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Comparative metagenomics using pan-metagenomic graphs
biorxiv.org
Identifying microbial genomic factors underlying human phenotypes is a key goal of microbiome research. Sequence graphs are a highly effective tool for genome comparisons because they enable high-r...
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Induced endosymbiosis between a fungus and bacterium reveals a shift from antagonism to commensalism | Nature Communications
nature.com
Nature Communications - Gassler et al. implant a free-living bacterium into fungal cells to study early steps in the establishment of an endosymbiosis. They observe vertical transmission of the...
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Nitrogen-fixing microbes gain genes in diverse types of living environments | PNAS
pnas.org
Biological nitrogen fixation (BNF), which is catalyzed by a large nitrogenase enzyme complex, has evolved in both bacteria and archaea. Indeed, nit...
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Nature research paper: Ethylene modulates cell wall mechanics for root responses to compaction https://t.co/ebvSuU7ebv
nature.com
Nature - Soil compaction traps ethylene around roots, which causes transcriptional upregulation of Auxin Response Factor1, resulting in decreased root cortical cell wall thickness and thereby...
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Cellular energy sensor SnRK1 suppresses salicylic acid–dependent and –independent defenses and bacterial resistance in Arabidopsis https://t.co/uNdTYs37GV
pnas.org
In nature, plants cope with various pathogens that compete for cellular resources during infection. It has long been suggested that plant defense a...
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Thank you @indian_link for highlighting our work and the recent award. Restoring the living soil https://t.co/2TdYi4ZrSC
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In #EnvironmentalMicrobiome 🦠Could air pressure be a key driver of plant-specific microbial response in the rhizosphere? 🚨Highlighting a critical yet often overlooked driver of plant–microbe dynamics during uphill range shifts 👉 https://t.co/XtrCnhAUxM
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I will be hiring a PostDoc and two graduate students on the topics related to understanding mechanisms of plant-Microbiome interactions and modeling. We are looking for candidates with strong bioinformatics and analytics skills. Please RT
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MicrobialScope: an integrated genomic resource with rich annotations across bacteria, archaea, fungi, and viruses | Nucleic Acids Research | Oxford Academic
academic.oup.com
Abstract. Microorganisms, including bacteria, archaea, fungi, and viruses, are the most taxonomically diverse and ecologically dominant life forms on Earth
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Calculating fast differential genome coverages among metagenomic sources using micov
nature.com
Communications Biology - micov computes coverage breadth across genomes and samples. Its application in metagenomics highlights strain heterogeneity, uncovers associations linking genetic elements...
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A Global Discovery of Antimicrobial Peptides in Deep-Sea Microbiomes Driven by an ESM-2 and Transformer-based Dual-Engine Framework
biorxiv.org
The escalating global threat of multidrug-resistant pathogens underscores the urgent demand for innovative strategies in antimicrobial peptide (AMP) discovery. Notably, deep-sea-related data resour...
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antiSMASH database version 5 | Nucleic Acids Research | Oxford Academic
academic.oup.com
Abstract. Specialized metabolites produced by microorganisms are frequently used in the development of drugs and crop protection agents. Genome mining is a
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Thrilled & honored to be included in the @Clarivate Highly Cited Researcher List 2025! 🚀 Huge thanks to my collaborators and the present & past members of the my lab #HighlyCited2025 Proud to contribute to the mission and vision of @ttuigcast
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In #Microbiome 🔍Identifying factors that promote candidate phyla radiation (CPR) survival & growth 🚨Overall CPR reached higher absolute abundances under oxic conditions than under anoxic conditions 👉 https://t.co/u4XRdgMGMK
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🌿 3 new PhD positions in the Ton lab @PPS_UoS. Part of the ERC project 'PlantMemo', exploring how plants remember & respond to stress. 🧬 PhD 1 (UK only) 👉 https://t.co/e7ZGObKtRw 🦠 PhD 2 (UK & EU) 👉 https://t.co/LCeyiJKccU 🌱 PhD 3 (UK only) 👉 https://t.co/vgjLNiduOn
#PhD
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Trehalose 6‐phosphate – a central regulator at the crossroads of sugar signalling, metabolism, and development - Fichtner - 2025 - New Phytologist - Wiley Online Library
nph.onlinelibrary.wiley.com
In mammals, blood sugar levels are tightly controlled by two hormones: insulin and glucagon. In flowering plants, a comparable regulatory mechanism exists, mediated by the sugar-signalling molecule...
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Quantifying microbial interactions based on compositional data using an iterative approach for solving generalized Lotka-Volterra equations
journals.plos.org
Author summary Microbes and animals often live in communities where species interact in complex ways. Understanding these interactions is essential for predicting population dynamics and how ecosys...
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Developing a Molecular Toolkit to ENABLE all to apply CRISPR/Cas9-based Gene Editing in planta https://t.co/iENpadQRpR
#biorxiv_plants
biorxiv.org
Gene editing, especially the CRISPR/Cas9 (Clustered Regulatory Interspaced Short Palindromic Repeats/CRISPR associated protein 9) system, has revolutionized trait development in crops. However, large...
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