Monarch Initiative
@MonarchInit
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LinkedIn: https://t.co/UUxTUQV0Q6 Semantically curating genotype-phenotype knowledge #OpenScience #Collaborative #Data
Joined August 2014
Twitter/X no longer aligns with our values; we are intentionally choosing to communicate about our work using other media. More info (including where to find us):
monarchinit.medium.com
Effective November 21, 2023, the Monarch Initiative and its associated projects will cease disseminating content through Twitter/X.
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RT @chrismungall: read about our @MonarchInit Chat GPT plug-in over on the non X site!.
linkedin.com
Monarch now has a ChatGPT plugin! You can execute a subset of queries over our disease-oriented knowledge graph using natural language, and even have your queries be woven in with general web...
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RT @CUBiomedInfo: Shawn O’Neil, PhD, MS, assistant research professor in @CUBiomedInfo and member of the @MonarchInit, was recently feature….
genomeweb.com
Bioinformaticians, researchers, and commercial software developers worldwide are trying to harness the power of generative AI for genomics without compromising scientific integrity.
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RT @NIH_ORIP: New video! 🚨. Hear firsthand how @mattmight at @uabprecisionmed used the @MonarchInit resource and ultimately shortened his s….
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RT @OHDSI: A Simple Standard for Sharing Ontological Mappings (SSSOM) Workshop for OHDSI Europe #OHDSISocialShowcase #JoinTheJourney . Lead….
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RT @GigaByteJournal: Our Board Member @monimunozto presenting in #BOSC2023 on standards to connect biomedical and behavioral data to AI in….
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A huge congratulations to @NicoMatentzoglu for winning the International Society for Biocuration’s Excellence in #Biocuration Advanced Career Award! We are so proud of you! @biocurator
link.medium.com
Dr. Nicolas (Nico) Matentzoglu, an invaluable semantic engineer in the Monarch team, is the recipient of the 2023 International Society for…
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RT @chrismungall: We added a howto guide to the @linkml_data docs on generating AI prompts from LinkML schemas. ma….
platform.openai.com
Explore developer resources, tutorials, API docs, and dynamic examples to get the most out of OpenAI's platform.
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RT @FanLi_RnD: The OntoGPT framework and SPIRES tool by @chrismungall 's team provide a principled approach to extract knowledge graph from….
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RT @compbiologist: This work would not have been possible w/o the incredible effort of the model organism databases (@mgi_mouse, @ZFINmod,….
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Join us in celebrating our new #collaboration with the @CPathInstitute! Learn more about our work to improve #drugdiscovery for #rarediseases here:.#teamscience #translationalscience #healthcare.
link.medium.com
For rare disease patients, limited drug treatments are available and research on specific diseases is often scarce. Improving access to…
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Monarch’s very own @NicoMatentzoglu is nominated for the Excellence in #Biocuration Advanced Career Award through @biocurator! Voting is open today through 6 June 2023! #careerexcellence #weareproudofyou.
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RT @chrismungall: Are #LLMs capable of interpreting the results of high-throughput genomics experiments? Given a list of genes (e.g. all ge….
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#Exomiser ranks potential rare Mendelian disease-causing #variants from whole-exome or whole-genome sequencing data. Learn more here: #RareDisease #OpenScience #BigData #Collaborative #TranslationalScience #Disease #Genomics #Healthcare.
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The @MonarchInit Biolink Model Brings Data Together! Find out more about our top 3 most downloaded papers in 2022 from the journal ASCPT here: #BiolinkModel #TeamScience #Collaboration #RareDisease #DrugRepurposing #TranslationalScience @linkml_data.
ascpt.org
Searching and compiling information from unstructured text is improving, but still presents barriers in navigating between data sources and publications. As a result, information that aids in answerin
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Find the link to @chrismungall's SWAT4HCLS 2023 conference Keynote on our Mastodon account here:
genomic.social
@Cmungall presented the SWAT4HCLS 2023 conference #keynote titled “Scaling up Semantics lessons learned from across the life sciences” Check out the presentation here: https://youtu.be/2LRVrm8nVz4...
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TOMORROW! Don't miss @monimunozto's presentation about Monarch Initiative's data reuse practices as part of the session “Connecting Phenotypes and Genotypes Using Data Science”, Apr 25 1:15–2:00pm ET. Free registration:
Join Monarch and other DataWorks! Prize recipients at a free online symposium (organized by @NIHDataScience and @FASEBorg) on April 25 about best practices in data sharing and reuse! #OpenScience #OpenData #DataReuse.@monimunozto.
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RT @lizworthey: Interesting use of GPT to build structured knowledge bases from unstructured text using Large Language Models. @chrismunga….
monarchinit.medium.com
Developing knowledge bases and ontologies is a labor-intensive task. SPIRES performs zero-shot learning to simplify the task.
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RT @IreneLopSci: @andrewwhite01 you asked me the other day about ontologies. This, from folks at @MonarchInit, is a great example of how us….
github.com
LLM-based ontological extraction tools, including SPIRES - monarch-initiative/ontogpt
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