JWSB
@JWSBAS1
Followers
73
Following
72
Media
6
Statuses
97
Studies alternative splicing in plants and promotes its importance in plant/crop biology
University of Dundee/JHI
Joined March 2016
Liz Truss' first speech as Prime Minister
170
1K
6K
3D RNA-seq has been used by >7.8K users from 81 countries since June 2019 for research and teaching, yet it is not directly supported by any public or private funding. Please help us to continue to provide this support to the research community. Survey:
1
1
2
Thanks to all who funded the Iso-seq, develop new analysis methods and make AtRTD3 to (re)analyse RNA-seq data (use 3D RNA-seq)! A high resolution single molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis | bioRxiv
biorxiv.org
Background Accurate and comprehensive annotation of transcript sequences is essential for transcript quantification and differential gene and transcript expression analysis. Single molecule long read...
0
7
9
New comprehensive Arabidopsis reference transcriptome AtRTD3- >160k transcripts, 79% from Iso-seq with defined TSS/TES. A high resolution single molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis | bioRxiv
biorxiv.org
Background Accurate and comprehensive annotation of transcript sequences is essential for transcript quantification and differential gene and transcript expression analysis. Single molecule long read...
0
11
16
Full article: 3D RNA-seq: a powerful and flexible tool for rapid and accurate differential expression and alternative splicing analysis of RNA-seq data for biologists
tandfonline.com
RNA-sequencing (RNA-seq) analysis of gene expression and alternative splicing should be routine and robust but is often a bottleneck for biologists because of different and complex analysis program...
0
4
19
The YouTube video of 3D RNA-seq App #3drnaseq
https://t.co/Mgh6fFhCaQ for differential expression and differential alternative splicing analysis is now available. @GARNetweets @benitez_lab @TheSainsburyLab @HuttonICS @dundeeuni @JamesHuttonInst
https://t.co/z4ZlKx3g8D
0
7
9
Jordan - we appreciate your tweets on 3D - thanks.
Fully expected a month long fight with my RNASeq dataset but popped it into the new 3D RNASeq app and was done in less than 2 days! I guess I'll have to return to the lab now then... Thank you @wenbin_g, @runxuan, @JamesHuttonInst for developing such a user-friendly tool!
0
0
6
Glad you found 3D useful and thanks for your comment.
Joehoe ! Just processed and analysed for the first time an RNAseq dataset (in an afternoon). Thank you Lieven Sterck for demystifying Galaxy@PSB and to the developers of the 3D RNA-seq APP
0
0
2
Very enjoyable SEB meeting - good talks and good friends. Seville is beautiful. #SEB2019 #3D RNA-seq
Inspired by John Brown's talk on alternative splicing at the SEB meeting in Seville! Use 3DRNA-seq for rapid and accurate analysis of RNA-seq data!!! User-friendly, designed for biologists, allows you to take RNA-seq analysing into your hands!!! #SEB2019
1
3
9
Very fulfilling to see 3D RNA-seq for easy, powerful and reproducible RNA-seq analysis attracting ~400 users and ~700 preprint downloads just in 4 weeks. Encouraging feedback from users also makes us believe that it will be a game changer
0
6
12
Fantastic achievement
Day 1 of our Nucleic Acids Conference 2019 has come to a close with a drinks reception in the School. Plenty of opportunity to reminisce together & celebrate 40 years of @lilley_mj lab in Dundee.
0
0
1
2008 Problem: global financial crisis Solution: not Brexit 2010 Problem: government deficit Solution: not Brexit 2015 Problem: Ukip Solution: not Brexit 2016 Problem: Tory meltdown Solution: not Brexit 2019 Problem: Brexit Solution: not Brexit #StopBrexit
1
82
207
3D RNA-seq - a powerful and flexible tool for rapid and accurate differential expression and alternative splicing analysis of RNA-seq data for biologists https://t.co/dInGBaKmMA
0
22
40
Pls RT: Curator post at our Uni Botanic Garden is seeking applications. The School through our teaching & division of Plant Sciences work closely with the gardens. We are involved with @JamesHuttonInst in the popular annual #PlantPower event that takes place at the garden.
We are recruiting for a Curator to join the University of Dundee to provide operational leadership for the Botanic Garden @DundeeBotanics, City Campus green space and sports pitches. For further information and details on how to apply, please visit: https://t.co/He14DrNByj
0
5
5
Check out this promising new RNA seq technique! Seems like this could be a powerful new tool. â3D RNA-seq - a powerful and flexible tool for rapid and accurate differential expression and alternative splicing analysis of RNA-seq data for biologistsâ https://t.co/5HiZ4SpyHX
0
2
4
#3DRNAseq - a powerful and flexible tool for rapid and accurate #differentialexpression and #alternativesplicinganalysis of #RNAseq data for #biologists - https://t.co/3sxDjGUZtH - @JamesHuttonInst - @dundeeuni
rna-seqblog.com
RNA-sequencing (RNA-seq) analysis of gene expression and alternative splicing should be routine and robust but is often a bottleneck for biologists because of different and complex analysis programs...
0
4
13
Would coke make him less toxic?
I'm trying to decide whether I believe Gove took coke, or if it's a ruse to make him seem less of nerd
0
0
0
Well done Celia - great news.
I am thrilled to receive the honour of an MBE today and to keep the spotlight on all the brilliant and much needed plant science education efforts.
0
0
2
Don't let a lack of bioinformatics skills get it the way of analyzing your RNA-seq data. 3D RNA-seq has the answers! Nice work from @JWSBAS1 @runxuan and co https://t.co/TFGLKjdLDK
0
20
37