Host-Microbe Interactions
@HostMicrobeLit
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Not a bot. Post-doc trying to make it easier to keep up with literature and promote good research conduct.
Australia
Joined January 2022
microshades: An R Package for Improving Color Accessibility and Organization of Microbiome Data #Microbiome #Rstats #metagenomics
https://t.co/AMbmsHiCL3
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TaxSEA: rapid interpretation of microbiome alterations using taxon set enrichment analysis and public databases #microbiome #metagenomics #bioinformatics #Rstats
https://t.co/GNoQMhDniV
academic.oup.com
Abstract. Microbial communities are essential regulators of ecosystem function, with their composition commonly assessed through DNA sequencing. Most curre
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Bifidobacteria support optimal infant vaccine responses | Nature #microbiome #science #microbology
https://t.co/4wgut4zUFK
nature.com
Nature - Neonatal antibiotic use is shown to reduce immune response to infant vaccines, accompanied by reduced abundance of Bifidobacteria in the gut microbiota, with experiments in mice indicating...
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Free scientific illustrations for biologists! š @NIH has released a library of 500+ free scientific illustrations to create figures, presentations, and illustrations! all freely available in the public domain. Retweet and spread the message! https://t.co/p1bD1kxO7H
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BTW Iām not trying to dunk on this. Genuinely trying to learn. I might have misunderstood sometime. I mean itās a Cell paper so obviously super impressive.
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What do others think of this? Iām sceptical of any universal #microbiome signature. In this case they focus on genomes which āwere detectable in more than 75% of the samplesā. This seems very high to me but they found hundreds of genomes which met this threshold?
A core microbiome signature as an indicator of health | Cell Metagenomics on a high-fiber dietary intervention plus reanalysis of 26 case-control studies. Identified a set of stably correlated genome pairs perturbed by interventions and diseases https://t.co/4EuMlJUNFL
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A core microbiome signature as an indicator of health | Cell Metagenomics on a high-fiber dietary intervention plus reanalysis of 26 case-control studies. Identified a set of stably correlated genome pairs perturbed by interventions and diseases https://t.co/4EuMlJUNFL
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Classifying compounds as prebiotics ā scientific perspectives and recommendations | Nature Reviews Gastroenterology & Hepatology #microbiome #research
nature.com
Nature Reviews Gastroenterology & Hepatology - Prebiotics selectively modulate the composition or function of the microbiome, thereby improving health. This Expert Recommendation presents a...
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The role of the gut microbiota in regulating responses to vaccination: current knowledge and future directions | FEBS Journal. Comprehensive Review, summarizes evidence & highlights potential mechanisms. #Immunology #microbiome
https://t.co/PEsWLb18sG
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Havenāt used this account in months. I come back and somehow Iām verified š³
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Exercise mitigates a gut microbiota-mediated reduction in adult hippocampal neurogenesis and associated behaviours in rats Great to see this out - Congrats @_Sarah_Nicolas @yvonnemnolan and all https://t.co/IJw3niJPhX
Thrilled to see my @IrishResearch postdoc project investigating the interaction between the gut-microbiome and exercise published today in @Transl_Psych - with Sebastian, @AonghusLavelle @JaneAEnglish @Thomazsan @jfcryan @yvonnemnolan - @AnatNeuroUCC
https://t.co/V2wY0ud2zj
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Integrating single-cell multi-omics and prior biological knowledge for a functional characterization of the immune system | Nature Immunology Review which critically assess underlying assumptions and limitations of these technologies in #immunology. https://t.co/zEsDHxOTjL
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Utilization of the microbiome in personalized medicine | Nature Reviews Microbiology https://t.co/dj2V96JVjk
nature.com
Nature Reviews Microbiology - In this study, Ratiner et al. examine the advantages, challenges and future perspectives of utilizing microbiome data in personalized medicine for optimal patient care.
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Metabolic diversity in commensal protists regulates intestinal immunity and trans-kingdom competition | Cell Must read. Great example of why we shouldn't just look at bacteria in the gut microbiome. https://t.co/uGEkfd9ZlF
cell.com
The differing metabolisms of commensal protists and bacteria in the gut microbiome shape the ability of these distinct microbes to interact with and modulate each other and the host immune system.
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Infant gut DNA bacteriophage strain persistence during the first 3 years of life | Cell Host & Microbe Analysed viral contigs assembled from 819 metagenomic samples collected from 52 infants. #microbiome #microbiota #virome
https://t.co/MZRwePRp6H
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Shotgun metagenomics reveals interkingdom association between intestinal bacteria and fungi involving competition for nutrients | Microbiome Compares ITS vs Metagen + demonstrates how to enrich for fungi using centrifugation. #microbiome
https://t.co/inJpS50sZE
microbiomejournal.biomedcentral.com
Background The accuracy of internal-transcribed-spacer (ITS) and shotgun metagenomics has not been robustly evaluated, and the effect of diet on the composition and function of the bacterial and...
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Microbiome diversity protects against pathogens by nutrient blocking | Science I don't think this will be surprising to anyone in the field but nice to see it demonstrated in using a combination of in vitro and in vivo gnotobiotic experiments. https://t.co/jPM02hTKtE
science.org
Diverse communities of commensal gut bacteria collectively limit pathogen colonization by blocking nutrient access.
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Spatial hostāmicrobiome sequencing reveals niches in the mouse gut | Nature Biotechnology SHM-seq - an all-sequencing-based approach that captures tissue histology, polyadenylated RNAs and bacterial 16S sequences directly from a tissue https://t.co/IIYhxj2gAb
nature.com
Nature Biotechnology - Spatial hostāmicrobiome sequencing simultaneously profiles microbes and host transcriptomes from mouse colons.
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Are people considering any other platforms for keeping up with the literature? Iām finding it increasingly difficult to justify being on here but I enjoy doing this
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Systematic mining of the human microbiome identifies antimicrobial peptides with diverse activity spectra | Nature Microbiology Resource based upon analysis of 2,229 HMP genomes. Identified candidates in-siliso and validated in-vitro. https://t.co/SiYoMw0Ssc
nature.com
Nature Microbiology - An analysis of over 2,000 genomes from Human Microbiome Project metagenomic data led to the identification of several extended- and narrow-spectrum antibiotics against...
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