Hossein Asgharian Profile
Hossein Asgharian

@Gentremet

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Principal Bioinformatics Scientist at Roche

Joined March 2021
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@genophoria
Hani Goodarzi
1 year
Check out the final and peer reviewed version of this preprint published by @CellReports. Congratulations @brianjwoo_bio and thanks to @felixfengmd and @LukeGilbertSF for the support.
cell.com
Woo et al. developed and implemented a computational and experimental platform to identify and characterize non-coding driver regulatory regions in metastatic prostate cancer patient data. They find...
@brianjwoo_bio
BrianWooSciAcc
3 years
(1/17) Excited to share our latest collaborative study from the labs of @genophoria and @felixfengmd! tl;dr: we developed an integrative platform to identify and deeply characterize non-coding drivers of prostate cancer progression. More to follow~
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@genophoria
Hani Goodarzi
3 years
Took us a minute, but I am happy to share the final version of this study, now published at @NatureCancer, on behalf of Bruce and Kristle. We have it all, regulatory RNA interactions, oxidative stress/ferroptosis, and metastasis:
nature.com
Nature Cancer - Culbertson et al. profile antisense RNAs using a newly developed computational pipeline and identify NQO1-AS as contributor to breast cancer progression and lung metastasis through...
@genophoria
Hani Goodarzi
4 years
Excited to share our second preprint of the week, courtesy of our former lab specialist Bruce Culbertson and our resident specialist Kristle Garcia, with help and support from many others, most notably Josh Rabinowitz’s group!
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@a_navickas
Albertas Navickas
3 years
Links between translation and alternative polyadenylation in metastasis? The story is out today! A great collab between @genophoria, @AndreiGoga_SF and @FKHM labs! Shout out to co-authors @Gentremet, @JulianeScience, @lisacfishsci among others!
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nature.com
Nature Cell Biology - Using ribosome profiling, Navickas et al. show that heterogeneous nuclear ribonucleoprotein C functions with PABPC4 to regulate alternative polyadenylation of a set of mRNAs,...
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@NatureCancer
Nature Cancer
3 years
⭐️ONLINE NOW @NatureCancer “Two isoleucyl tRNAs that decode synonymous codons divergently regulate breast cancer metastatic growth by controlling translation of proliferation-regulating genes” by @genophoria @SohailTavazoie & Co. 👇 https://t.co/koRUdEVH0H https://t.co/VfMajxe614
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@NobelPrize
The Nobel Prize
3 years
BREAKING NEWS: The 2022 #NobelPrize in Physiology or Medicine has been awarded to Svante Pääbo “for his discoveries concerning the genomes of extinct hominins and human evolution.”
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@mpassarelli15
Maria Passarelli, MD, PhD
4 years
Very excited to share our paper, identifying a tumor-suppressive tRNA synthetase, published today in @naturecellbiol! https://t.co/6tR9WyZNlA @sohailtavazoie @genophoria @triimdphd @rockefelleruniv… 1/11
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@a_navickas
Albertas Navickas
4 years
Check out the amazing tools developed by @Gentremet for this study here:
github.com
A suite of regression-based tools for ribosome profiling data analysis - goodarzilab/Ribolog
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@a_navickas
Albertas Navickas
4 years
Finally, modulating the poly(A) site selection using a small molecule drug reduces the metastatic lung colonization, providing evidence for a therapeutic vulnerability of HNRNPC-low tumors.
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@a_navickas
Albertas Navickas
4 years
Lower expression of the HNRNPC-PABPC4 axis components increases metastasis in xenograft mouse models and is associated with poor clinical outcomes in breast cancer patients.
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@a_navickas
Albertas Navickas
4 years
In highly metastatic cells, the lower expression of HNRNPC and PABPC4 results in the 3' UTR lengthening of their target mRNAs and subsequent translational repression, at least partly through an Argonaute-dependent RNAi.
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@a_navickas
Albertas Navickas
4 years
HNRNPC is known as a nuclear regulator of alternative splicing – how could it regulate translation? It turns out HNRNPC interacts with PABPC4, a poorly characterized poly(A) binding protein, and binds target mRNAs near poly(A) signals.
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@a_navickas
Albertas Navickas
4 years
This study started with a question: what are the unknowns of translational control in breast cancer metastasis? By combining Ribo-seq and Ribolog, a new tool by @Gentremet for Ribo-seq analysis, we found HNRNPC to control translation of a metastasis suppressing mRNA regulon.
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