Deepti Jaiswal
@DeeptiJaiswal
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Senior scientific curator at @emblebi
Joined November 2009
Congratulations..
Thrilled to share our work on fine-mapping of immune-mediated diseases (IMD) using regulatory quantitative trait loci (QTLs) finally out in @NatureGenet
https://t.co/t0piCoGOxl
@SoranzoTeam @sangerinstitute @Cambridge_Uni
#immunediseases #autoimmune #GWAS #QTL ๐งต 1/14
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Friday of release. Now you can search datasets with @pride_ebi chatbot ( https://t.co/BbBuwG8ikU) using LLMs #Mixtral and #Llama2. Cool!!!. You can talk with the LLM and get your recommendations. If the dataset has an #SDRF you have more chances to find it. ๐๐๐
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It was again an incredible 2023 for proteomics data sharing, including the biggest submission to PRIDE with 15k raw files. Thanks to all the @pride_ebi and @DeeptiJaiswal for the plot. Let's start 2024.
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My recent interview with The Telegraph India (@ttindia) discussing bio curation and the role of a curator as a potential career path. @emblebi #interview #biocutation #career
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Release at @pride_ebi ๐๐ฅณ. For some time, users have been asking to only submit the files affected (modified, added, or deleted) during the resubmission. This is now possible in the submission tool: https://t.co/pkCba5Dlsq. Now you can select a private submission and modify it.
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Big shout out to the wonderful @EddingtonRA who are organising the Eddington #Coronation Celebration on Sunday 7 May from 11am-2pm @storeysfield. Plenty of activities, crown-making, coronation cupcakes will be available for the community https://t.co/AEODu4mEnW
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and a progressive governance model that supports and encourages community driven curation #biocuration2023 @biocuration2023
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Charles Tapley Hoyt : Advocating and promoting a new model for the creation and maintenance of curated resources that promotes longevity through a combination of technical and social workflows
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Careers in Biocuration : Quite interactive sessions so far, a lot of good suggestions coming from the audience. #biocuration2023 @biocuration2023
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Last community talk of the session by Nancy George from Expression Atlas EMBL-EBI : She will be talking about Single cell anatomogram project to understand how expression profiles define cell populations. #biocuration2023
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Best way to start the end of the conference : Day 4 Our last keynote speaker : Guy Cochrane on Global Biodata Coalition (GBC) Forum has been formed to overcome the existing issue of poor coordination between funders/data resource managers. #biocuration2023 @biocurator
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It's fascinating to see almost 80% of attendees moved to AI and machine learning sessions :) Shows the trend and interest of the biocurator's community. #biocuration2023
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2. scFAIR need for a centralized, standardized repository where researchers can collaboratively upload, annotate, or access single-cell metadata 3. Christopher Southan on resolving code names to structures from the medicinal chemistry literature: not as FAIR as it should be.
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Day 3 : very FAIR morning 1. APICURON: all about fair credits to biocurators for their efforts and contribution which is difficult to quantify.
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FAIR session: Talk 1. Adel Bouhraoua presents about APICURON, a database to credit and acknowledge the work of biocurators and promote engagement by implementing gamification concepts #biocuration2023 #FAIR
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FAIR session: Talk 2. Frederic Bastian talks about scFAIR: Standardization and stewardship of single-cell metadata #biocuration2023 #FAIR #singlecell
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Starting off Day 3 of #biocuration2023 with a keynote from Marco Roos, from Leiden University Medical Centre, Netherlands. Marco is presenting on "From curating data to curating the Findability, Accessibility, Interoperability, and Reusability of data for machines"
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Marco Roos : advocating the importance of FAIR and linked data in the field of biomedical research #biocurator2023 @biocuration2023 @biocurator
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Standards : Talk 2. Patrick Masson on capturing knowledge of human biology using Gene Ontology Causal Activity Models (GO-CAMs) including human gene functions, microbiome gene functions, and the regulation and roles of small molecules in human systems #biocuration2023
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