Alexei Aravin Profile
Alexei Aravin

@AlexeiAravin

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Professor of Biology at Caltech. For our Lab and Science visit AAA Lab @AravinLab

Pasadena, CA
Joined March 2018
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@AlexeiAravin
Alexei Aravin
6 months
Your immune system fights invaders with tools evolved from a tamed genomic invader
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@AlexeiAravin
Alexei Aravin
7 months
Мы, учёные, восхищались людским гением. А теперь ИИ строчит стихи, а наш удел? Крутить гайки (или пыхтеть за лабораторным столом). Будущее человечества — не поэзия, а сантехника! P.S. Твит написан ИИ
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@AlexeiAravin
Alexei Aravin
7 months
As scientists, we marveled at human creativity. Now AI’s writing poems, and our last gig? Wielding a wrench (or toiling at the bench). Humanity’s future is less poetic, more pipe-fixing. P.S. Tweet written by AI
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@peiwei_chen
Peiwei Chen
8 months
looking forward to sharing my PhD work with @AlexeiAravin @Caltech at #Dros25 tonight & meeting old and new friends throughout the fly meeting 😀
@GeneticsGSA
Genetics Society of America
9 months
We're excited to announce the 2025 Larry Sandler Award recipient, @peiwei_chen 🎉 This award honors students completing a PhD in Drosophila research. Dr. Chen will present the Larry Sandler Memorial Lecture on evolutionary innovation in genome defense at #Dros25 in March. 1/3🧵
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@AlexeiAravin
Alexei Aravin
2 years
This is THE problem. Overt fraud is (hopefully) rare, but this is not. Of course, it is not that glamour journals are to be blamed for this exclusively. Many scientists are more than happy to play this game
@mameister4
Markus Meister
2 years
Another problem: Glamour journals seduce scientists to submit eye-poppingly improbable claims, send them through perfunctory peer review, and then publish them as click bait. The reproducibility of this Sciency stuff is <50%, not because of overt fraud.
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@AlexeiAravin
Alexei Aravin
2 years
🎯🎯🎯
@mameister4
Markus Meister
2 years
Another problem: Glamour journals seduce scientists to submit eye-poppingly improbable claims, send them through perfunctory peer review, and then publish them as click bait. The reproducibility of this Sciency stuff is <50%, not because of overt fraud.
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@cshperspectives
Richard Sever
2 years
A culture that "reward[s] 'winners' (postdocs who generate favorable results) and marginalizes 'losers' (postdocs who struggle to generate such data)” leads to 20 years of "fudging of results [in] labs at three separate institutions".
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stanforddaily.com
Stanford President Marc Tessier-Lavigne will resign effective Aug. 31. He will also retract or issue lengthy corrections to five widely cited papers for which he was principal author after a Stanfo...
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@AlexeiAravin
Alexei Aravin
2 years
I see the peer-review and editorial process - especially in so-called top-tier journals - as a great impediment to doing good science.
@arjunrajlab
Arjun Raj
2 years
Can I just say that after having a (really solid) paper working its way through review for *3+ years* and *still* dealing with baseless criticism from reviewers, eLife sounds very attractive to me.
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@AlexeiAravin
Alexei Aravin
2 years
A great review of antiphage systems – the topic which is exploded over the last few years. However, only a subset of pAgos antiphage mechanisms are shown in this figure. Unlike catalytically inactive short pAgos, active pAgos directly attack invading phages cleaving their DNA.
@MDMlab_Paris
MDMLab
2 years
So many novel antiphage systems out there! Hard to keep up with the pace of discoveries? We reviewed for @NatureRevMicro the highly diverse antiphage defence systems of bacteria; from molecular mechanisms to evolutionary drivers of such diversity. https://t.co/eBdGmcRCBz
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@AlexeiAravin
Alexei Aravin
2 years
Thus, different short pAgo use distinct molecular mechanisms, but all act as abortive infection systems that trigger cell death when it is infected by foreign elements.
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@AlexeiAravin
Alexei Aravin
2 years
Other short pAgos form complexes with a distinct nuclease. Target recognition unleashes the nuclease activity causing indiscriminate collateral cleavage of DNA and RNA. Activation of such pAgo occurs during phage infection and leads to cell death. https://t.co/NFSBfR3MYn /3
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biorxiv.org
Two prokaryotic defence systems, Argonautes (pAgos) and CRISPR-Cas, detect invader nucleic acids using complementary guides. Upon recognition, the target is cleaved through nuclease activities of...
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@AlexeiAravin
Alexei Aravin
2 years
Some short pAgo form complexes with TIR or SIR2 proteins. Recognition of the target by pAgo activates NADase activity of TIR or SIR2 domain. NAD depletion causes cell death. Beautiful papers from Siksnys and Swarts labs: https://t.co/wi3yYELWdE https://t.co/fGyKUygF53 /2
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pubmed.ncbi.nlm.nih.gov
Argonaute proteins use single-stranded RNA or DNA guides to target complementary nucleic acids. This allows eukaryotic Argonaute proteins to mediate RNA interference and long prokaryotic Argonaute...
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@AlexeiAravin
Alexei Aravin
2 years
The new story from the world of prokaryotic Argonautes. Reminder: Argonaute is the only defense system present in all domains of life! A large fraction of Argonautes in prokaryotes is so-called short Agos that lack catalytic activity. How do they work? /1
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@peiwei_chen
Peiwei Chen
2 years
woke up to a Dispatch article by Mark Van Doren and Caitlin Pozmanter @CaiPoz highlighting our recent work @CurrentBiology 😍 it is the mood boost that one needs on this gray, rainy Monday in LA! https://t.co/JqB59SQLFp
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cell.com
The piRNA pathway represses transposon activity to protect the germline genome for future generations. A new study shows how germline sex determination influences the production of different piRNAs...
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@maria_ninova
Maria Ninova
3 years
Happy to share that our work with @AlexeiAravin exploring the ovarian SUMOylome by proteomics is now published online in @CellGenomics https://t.co/yKx0HnJCv6 🎉 1/2
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cell.com
Adapting diGly proteomics for SUMO target discovery, Ninova et al. identify numerous SUMOylated proteins among heterochromatin and piRNA pathway factors, indicating unexpectedly broad implications of...
@maria_ninova
Maria Ninova
3 years
I’m excited to share our preprint 'Pervasive SUMOylation of heterochromatin and piRNA pathway proteins' https://t.co/JdxGCeYCe2 This piece is very special for me as it marks the end of my wonderful postdoc journey with @AlexeiAravin and the start of my lab at UCR .. a 🧵1/13
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@AlexeiAravin
Alexei Aravin
3 years
- Unlike KAP-1 which promotes its own SUMOylation, Bonus relies on a separate SUMO-ligase . Although TIF1 proteins are SUMOylated in both insects and mammals, both the SUMOylation mechanisms and sites of modification are different, suggesting it has developed independently /7
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@AlexeiAravin
Alexei Aravin
3 years
- Bonus is modified by SUMO at a single site and this modification is essential for its repressive activity. Lack of SUMOylation causes the dissociation of Bonus from chromatin and its accumulation in distinct nuclear granules. /6
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@AlexeiAravin
Alexei Aravin
3 years
- Bonus acts as a potent transcriptional repressor when recruited to chromatin and this repression associates with an accumulation of repressive histone marks. /5
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@AlexeiAravin
Alexei Aravin
3 years
- In the germline, Bonus represses ectopic expression of genes that are normally expressed in somatic tissues, but it is not involved in the repression of transposons. /4
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@AlexeiAravin
Alexei Aravin
3 years
flies have a TIF1 homolog called Bonus, but do not have any KRAB proteins. It turned out that Bonus is quite different from KAP1: - Bonus is essential for female germline development and fertility, including the maintenance and development of germline stem cells. /3
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