
Agnik Dasgupta
@Agnik85
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Previously: Laboratory of Sensory Neuroscience, #HHMI #HudspethLab @RockefellerUniv; & Left-Right patterning @amacklab
Joined June 2010
RT @CampasLab: Excited to share the final version of the STRESS software paper š Do you want to measure cell or tissue stresses using deforā¦.
nature.com
Scientific Reports - STRESS, an automated geometrical characterization of deformable particles for in vivo measurements of cell and tissue mechanical stresses
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RT @tobyandrews: Thrilled to see our latest work online @Dev_Cell! š„³ . How do cells build functional organs with precision?š«š«š Here, we shā¦.
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RT @truenorth_ia: I just published a video showing how to use Pixi and Napari-Easy-Augment-Batch-DL for reproducible deep learning segmentaā¦.
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RT @goguialonso: After years of work, our study is out in PNAS!.We preserved the active process ex vivo in the mammalian cochlea and show tā¦.
pnas.org
Hearing hinges upon the earās ability to enhance its responsiveness by means of an energy-expending active process that amplifies the very mechanic...
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RT @NeilShubin: New from the lab! Announcing MORPHOVIEW a powerful tool to quantify in high throughput the 3D structures of cells and tissuā¦.
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RT @alxndrkalinin: š¬API-first feature extraction for image-based profiling workflows. If you need to obtain interpretable features from youā¦.
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RT @edyoshikun: Excited to share an update on #DynaCLRāa self-supervised method to learn dynamic cell & organelle embeddings from time-lapsā¦.
arxiv.org
We report DynaCLR, a self-supervised method for embedding cell and organelle Dynamics via Contrastive Learning of Representations of time-lapse images. DynaCLR integrates single-cell tracking and...
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RT @Dev_Cell: Online now: Remodeling of cadherin contacts in embryonic mesenchymal tissues during differential cell migration https://t.co/ā¦.
cell.com
Rozema et al. show how cadherin contacts remodel in actively migrating mesenchymal-like Xenopus mesoderm. Most cadherins are removed through peeling, while the remnant condenses into a strong contact...
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RT @SaxenaLab: How an ol'factory' assembly line constantly manufactures neurons: Pleased to share our work in @stemcellreports, led by Sriiā¦.
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RT @afonsomendes92: š#SReD, our #OpenSource #imagej plugin for automatic detection and quantitative analysis of repetitive biological strucā¦.
nature.com
Nature Communications - Mendes and colleagues present SReD, an unsupervised tool that detects repetitive biological structures in microscopy images. It works across imaging modalities and reveals...
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RT @appy_anubhav: preprint: Using a combination of experiments and theory, we show that force patterning at apical junctions drives three-dā¦.
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RT @AI4LifeTeam: Ever wished your AI model could test itself before you download it? Now it can. AI4Life has a new model evaluation platfoā¦.
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RT @czbiohub: @NatMachIntell @mattersOfLight @ChanZuckerberg Read the paper, led by Ziwen Liu & @edyoshikun, here ⤵ļø.
nature.com
Nature Machine Intelligence - Ziwen Liu et al. report Cytoland, an approach to train robust models to virtually stain landmark organelles of cells and address the generalization gap of current...
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RT @KavliFoundation: Meet Dr. Gaby Maimon, Director of the Kavli Neural Systems Institute. In his lab, he aims to push the boundaries of brā¦.
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RT @stevenstrogatz: This weekās guest on āThe Joy of Whyā is my friend L. Mahadevan. The Maha that I knew a long time ago was thinking abouā¦.
quantamagazine.org
From brain folds to insect architecture, L. Mahadevan explains how complex biological forms and behaviors emerge through the interplay of physical forces, environment and embodiment.
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RT @ZebrafishRock: Due to their aquatic environment, #zebrafish are perfect for small molecule drug screens. Many drugs have been repurposeā¦.
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RT @RockefellerUniv: Last week, several Rockefeller scientists stepped away from their lab benches to perform compositions by Brahms, Mendeā¦.
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RT @chinta_tcgcrest: ā³ 1 WEEK LEFT!.Apply now for the fully-funded PhD programme at CHINTA, TCG CREST (Aug 2025 intake). Join us in pushingā¦.
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