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Arkadiy Garber Profile
Arkadiy Garber

@theironark

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Bioinformatics, microbiology, evolution, astrobiology, symbiosis, mealybugs, iron cycling @ASUBiodesign PapersAloud: https://t.co/Hmaq24T3UI

Joined February 2017
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@theironark
Arkadiy Garber
3 years
Have you ever worked with samples containing DNA from prokaryotes and eukaryotes (e.g. host and microbe)? If so, I recently wrote a software program that can separate out bacterial/archaeal sequences from eukaryotic ones:
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bmcgenomics.biomedcentral.com
Background Shotgun sequencing of cultured microbial isolates/individual eukaryotes (whole-genome sequencing) and microbial communities (metagenomics) has become commonplace in biology. Very often,...
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@theironark
Arkadiy Garber
11 days
Is that right?? If so, every month, she makes twice what a typically grad student might receive in a year’s worth of stipend.
@LocasaleLab
Jason Locasale
15 days
This Whitehead Institute for Biomedical Research is a nonprofit. It turns out the Director makes 1M+ , the VP 500K+, and the Secretary 400K+. https://t.co/osGgzvQ8RG
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@doctorinigo
Iñigo San Millán
19 days
It is not just the mother’s mitochondria anymore. For decades, we have believed that mitochondrial traits are passed only through the maternal line because mitochondria come from the egg as they occupy too much space to be carried by spermatozoids. This new study shows that
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cell.com
Yin et al. show that paternal exercise improves offspring endurance capacity and metabolic health via sperm microRNAs that reprogram gene expression in early embryos, revealing how exercise benefits...
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@TheCinesthetic
cinesthetic.
1 month
Idiocracy (2006) opens by throwing you straight into its hilariously dumbed-down future.
@TheCinesthetic
cinesthetic.
1 month
Of all movie opening scenes, what one sold the entire film the most?
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@mccrystal_alex
Philly Sports Sufferer
2 months
HERE IS THE MERRILL REESE CALL OF THE GAME WINNING BLOCK GOOSEBUMPS
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@RealEmirHan
Emir Han
2 months
Breaking Bad has an alternate ending on DVD where Bryan Cranston wakes up as Hal from Malcolm in the Middle — revealing the entire series was just a nightmare.
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@midauthorbio
Middle Author Bioinformatics
3 months
Plasmodium falciparum is the protozoan parasite behind the most severe form of malaria, transmitted by Anopheles mosquitoes. If you want to see where P. falciparum sits in the tree of life, you can now do so easily with our microbial omics web app: https://t.co/1M6zEatvxP in
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@OfficialSMBE
Society for Molecular Biology and Evolution
3 months
🦠 BII CME Annual Symposium 2025 - Mechanisms of Cellular Evolution 🔗 https://t.co/B9U3YDzeZ8 🗓️ Nov. 5-8 2025 📍 Arizona State University 📄 Abstract submission deadline (posters and short-talks): October 1, 2025 (11:59pm Arizona time) #evolution #cell #biology
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@symPiotr
Piotr Łukasik
3 months
Our new preprint! #Bartonellaceae bacteria, known as mammalian #pathogens, also colonizes #planthoppers. The planthopper #symbionts typically resemble related ant symbionts in their nutritional functions, but show a much greater breadth of #genome sizes and functions. 1/2
@biorxiv_ecology
bioRxiv Ecology
3 months
Contrasting genomic trajectories of Bartonellaceae symbionts of planthoppers https://t.co/ATyDmWIh7R #biorxiv_ecology
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@NikoMcCarty
Niko McCarty.
3 months
A genome is not a one-dimensional object. It is dynamic and quickly-changing, not only in TIME but also in SPACE. A new paper, published in Nature, reports the 3D structure of the E. coli genome. The whole thing was mapped with a resolution of 10 base pairs; enough to clearly
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@NikoMcCarty
Niko McCarty.
4 months
In a single E. coli, about 25 percent of all proteins use metals (like zinc, iron, copper, magnesium, etc) to do their chemistries. And yet, incredibly, fewer than ONE FREE METAL ION is present per cell on average. There are, in other words, basically no loose metal ions
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@jcamthrash
Cameron Thrash
6 months
Isolation and characterization of a bacterium affiliated with the hitherto uncultured candidate phylum WOR-3 from a deep-sea hydrothermal fluid
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journals.asm.org
Genome analysis from various environments has revealed the overall diversity of microorganisms. However, there are many lineages for which culture representatives do not yet exist, and the characte...
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@pacyc1841
Tominaga K. (tomiken)
6 months
The Viral AlphaFold Database of monomers and homodimers reveals conserved protein folds in viruses of bacteria, archaea, and eukaryotes | bioRxiv
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biorxiv.org
Viruses are among the most abundant and genetically diverse entities on Earth, yet the functions and evolutionary origins of most viral proteins remain poorly understood. Their rapid evolution often...
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