Phase Genomics
@PhaseGenomics
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Blueprints for Biology™: Genomics, Metagenomics, Cytogenomics | ProxiMeta™ Metagenome Deconvolution | Proximo™ Genome Scaffolding | Hi-C Kits |
Seattle, WA
Joined October 2014
Bees carry more than nectar. Their gut microbiomes buzz with plasmids, sharing tetracycline resistance genes across hives. @shy_symbiont from @ChicaScientific’s lab used Hi-C to track these mobile elements & explore colony-specific patterns traditional metagenomics misses.
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Stuck on Hi-C data? First 25 researchers to email get a free consult with our computational scientists—whether you're using our kits or another provider's. Email info@phasegenomics.com with "25 in '25 Bioinformatics Promo" in the subject line to claim yours.
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Save 25% on Hi-C kits through Dec 31. From complex plant genomes to metagenome binning, Phase Genomics brings clarity to your toughest research questions. Email info@phasegenomics.com with "25 in '25 Kit Promo" in the subject line to claim your discount.
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Mobile genetic elements buzz through bee guts. @ChicaScientific’s team at Indiana University used Phase Genomics’ Hi-C to connect plasmids + phages to microbes, showing how bee behaviors drive gene sharing & #AMR. More in the preprint from @shy_symbiont: https://t.co/ZeRY9bBPgh
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Discover how the research team used our Proximo™ Hi-C plant kit in the full paper:
academic.oup.com
Abstract. Salicornia depressa (American pickleweed) is the most widespread member of its salt-loving genus in North America. Pickleweeds typically colonize
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🌿 Scientists have produced a high-quality, chromosome-scale genome for American pickleweed, a salt-loving, tetraploid marsh plant. With ~80k genes and detailed methylation data, this resource paves the way for understanding salt-tolerance and supporting salt-marsh conservation.
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New at #AMPath2025: He Fang, PhD, will showcase Genomic Proximity Mapping® (GPM) and CytoTerra® in #sarcoma. Stop by Level 2, 258ABC on 11/13 from 2:30 – 3:30 pm ET to discover how GPM uncovers hidden structural variants and mosaicism in challenging archival samples.
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🌿 New in @NaturePlants! Researchers used Phase Genomics’ Hi-C to build a haplotype-resolved chromosome-scale #genome of a hybrid eelgrass (Zostera marina × Z. pacifica), revealing genomic clues to low-light tolerance that could boost coastal restoration.
nature.com
Nature Plants - Seagrass genomes of the deep-water Zostera pacifica and shallow-water Z. marina from the Eastern Pacific Ocean provide evidence for low-light adaptation exemplified in the wild...
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Big spotlight on Genomic Proximity Mapping® (GPM®) from @JMDiagn: See how @UW researchers use our GPM platform, CytoTerra®, to detect cryptic structural variants and mosaicism missed by standard tests. Full press release from @Elsevier: https://t.co/rABTqZIOjZ
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Phase Genomics Hi-C helped untangle the pomegranate genome, ordering contigs into chromosome-scale scaffolds, clarifying chromosome counts & revealing domestication patterns. Full study from @VIPagriculture: https://t.co/CQFnzeKPib
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Phase Genomics’ Hi-C tech helped undergrads assemble the “best duckweed genome yet,” giving them hands-on research experience, boosting PhD prospects, and advancing plant biology. Full story from @aeharkess at @HudsonAlpha on YouTube: https://t.co/dtKNM6ffH5
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Hi-C at scale is reshaping plant biology. With Phase Genomics’ kits, @aeharkess & @HudsonAlpha have published dozens of genomes, uncovered how rising CO₂ alters chromatin structure, and explored how climate change ripples through living systems. 🔗 https://t.co/tP9Q9a1zJi
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Happy #WorldPhageDay. Tiny, abundant, and anything but boring, phages shape microbial communities, move genes around, and can tip the balance in all kinds of ecosystems. The catch: to know a #phage only you must know its host. ProxiMeta Hi-C technology gives us that link.
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🌳 New chromosome-level Ulmus minor (field elm) genome unlocks clues to Dutch elm disease resistance. Using long reads and Hi-C, the team built this 2.1Gb genome and mapped clusters of resistance genes conserved across elm species to aid restoration. https://t.co/xSxKrSAVeN
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ProxiMeta™ Hi-C fills the missing link in shotgun metagenomics, connecting viruses to hosts & revealing hidden microbial relationships. Hear more from Phil Hugenholtz & Phase Genomics CEO @IvanLiachko on how Hi-C unlocks the microbiome. → https://t.co/m4lKSzQrv4
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Skip the computational guesswork. Hi-C / proximity ligation reveal complete chromosomal architecture based on actual intracellular contacts. From plant genomes to metagenomes, Phase Genomics delivers chromosome-scale assemblies traditional methods can’t: https://t.co/xJLRUTYAqy
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In this great new paper, the authors use metagenomic Hi-C to show that #phage with broad host range are fairly common, contrary to the prevailing view on their biology. Cutting edge methods like Hi-C are shedding light on our scientific blind spots. https://t.co/zECkkws5qE
nature.com
Nature Microbiology - Proximity-ligation-based sequencing from 111 samples and 5 environments reveals that a substantial proportion of phages infect multiple species.
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ProxiMeta™ turns your benchtop box into a Hi-C metagenomics powerhouse. Order before Sept. 30 to lock in 20% savings on the 8-sample ProxiMeta Classic Hi-C Kit, or 50% on the 2-sample ProxiMeta Starter Hi-C Kit. 🔗 https://t.co/0mQ5iLe4vU
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Don’t let your lab’s grant dollars go to waste. Order before September 30 to save 20% on ProxiMeta™ Classic Hi-C Kit, or 50% on the ProxiMeta Starter Hi-C Kit. ✔️ Hands-off workflow ✔️ Flexible timelines ✔️ PGShield™ to keep samples shelf-stable 🔗 https://t.co/tZT8bPWDR9
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Join us at the Microbiome Innovation One Health Conference in Oxford on Sept 15! @IvanLiachko will present how ProxiMeta™ maps microbes, viruses, plasmids & resistance genes, bringing clarity to complexity across human, animal and environmental health.
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