Giulia Palermo
@palermo_lab
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Giulia Palermo Lab at the University of California, Riverside. Biophysicist passionate about Science & Art!
Riverside, CA
Joined September 2016
New study @biorxivpreprint We revea, how TnsC filaments form and grow in #CRISPR-associated transposons using #FreeEnergy sims & introduce #DeepLearning-based Graph Attention Networks for decoding biomolecular systems! https://t.co/WD224dUyi6
#GNN #StructuralBiology
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Thrilled to share that I’ll be joining @UCLA as Professor in July 2026! Grateful to my amazing students, postdocs, colleagues @UCR, collaborators, and mentors. A new chapter begins, advancing #compchem, #AI to explore #RNA, #DNA, #CRISPR, and emerging directions in #Biophysics.
The UCLA Department of Chemistry & Biochemistry is excited to welcome world-renowned computational biophysicist Prof. Giulia Palermo @palermo_lab, who will join the @UCLA faculty as a Full Professor on July 1, 2026! https://t.co/uzmRgWdlZs
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Just out @JCIM_JCTC! Making ML-based force field parametrization open and easy for everyone. With TorchANI, @RDKit_org & @openmm Excellent work by @pablitoarantes & @sou_svk 🔗 https://t.co/Sk70K2197S…
ParametrizANI found a home! Our paper is now published in JCIM! Making ML-based force field parametrization open and easy for everyone. With TorchANI, @RDKit_org & @openmm 🔗 https://t.co/6SrjSMkF13
@JCIM_JCTC @palermo_lab @sou_svk
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🚀 Many thanks to @SDSC_UCSD and @HPCwire for highlighting our work using @NSF supercomputers to uncover how “jumping genes” can transform #GeneEditing technologies! https://t.co/tXtbCgSq1W
#Supercomputing #HPC #CRISPR #RNA #CompChem
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Thank you @dreyfusfndn for your unwavering support!
Using advanced supercomputers, the lab of Camille Dreyfus Teacher-Scholar Giulia Palermo (@palermo_lab) of @UCRiverside uncovered the dynamic choreography of a CRISPR-associated transposon, offering new insights on how “jumping genes” find their targets. https://t.co/iiobWX20Zp
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✨Best way to end the week! Just learned from Kevin Freedman @UCRiverside that, at the end of the exam, students in his Dynamics of Biological Systems class draw their favorite professor. Guess who got picked... ♥️♥️♥️ #biophysics #TeachingJoy #STEM #LoveScience
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This is work mainly done by @MohdAhsan, an incredibly talented postdoc in the lab. Grateful for the experimental validation by David Taylor lab @UTAustin l and NMR by George Lisi lab @BrownUniversity! Thank you Isabel Strohkendl, Aakash Saha, and all others for all your work!
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🚀New from our lab @biorxivpreprint! We reveal a cryptic metal binding pocket that dinamically forms in #CRISPR-Cas9 and regulates the metal-dependent activity of #Cas9. #MarkovModels & #QuantumChemistry corroborated by biochem & #NMR experiments. https://t.co/6k1Cep9LLB
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"Simulations are the future" ✨♥️! I knew it! The future of science is computational and it's only the beginning!
Simulations are the future, & one of the main tools we’ll ultimately use to understand and predict things about the universe. This is why I’m so excited about Genie 3, our latest interactive world simulator - here are some insanely cool things you might have missed about it 🧵:
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Developed by the incredible @pablitoarantes & @sou_svk in our lab!
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New from our lab! ParametrizANI - a #NeuralNetworks tool for molecular parametrization. Predicts potential energy surfaces with near-DFT/CC accuracy, at a fraction of the computational cost! #AI #QuantumChem #CompChem #ML
https://t.co/1EndCqaYRP Try it: https://t.co/sEFSbUYsLL
github.com
ParametrizANI - Fast, Accurate and Free Dihedral Parametrization in the Cloud with TorchANI - palermolab/ParametrizANI
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Excited to be at the @ProteinSociety meeting in SF! Curious how #NeuralNetworks can decode biomolecular mechanisms? Don’t miss the poster by @ChinmaiPindi and @AmunPatel ! 🔬🧬📊#ProteinSociety2025 #AI #Proteins #CRISPR #DNA
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This was developed by @ChinmaiPindi, Mohd Ahsan and @sou_svk , three amazing lab members! More on #NeuralNetworks, #GNN & new #AI approaches is yet to come! Stay tuned !
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By leveraging deep learning–based graph representations, our #GAT model provides interpretable mechanistic insights from complex molecular simulations and is readily adaptable to a wide range of biological systems.
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This was the amazing work of Amun Patel, a graduate student in my lab with Souvik Sinha and Pablo Arantes!
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New paper from our lab just out @PNASNews! 🚀 Using free energy simulations, #AIphaFold and #cryoEM refinement, we uncovered a key conformational change in a paradigm-shifting #CRISPR-associated #transposon capable of precise gene knock-ins. 🔍🧬 https://t.co/E6vLAw0igx
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What a wonderful happy hour at #ACSSpring2025 I really enjoys and the talks were amazing ! Do it again !
It’s been a fantastic happy hour for our enhanced sampling symposium at #ACSSpring2025 @barak_hirshberg
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@palermo_lab See you there!!! Please stop by if you can!
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Thrilled to join #ACSSpring2025 and meet my friends! Don't miss my talk on how #AI & #EnhancedSampling can describe gene editing & refine #cryoEM maps. We’ll be presenting our latest research on #CRISPR-associated transposon systems + other exciting advancements! #compchem #RNA
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