Dmitry
@meleshko_da
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PhD student in Weill Cornell Medical College
Saint Petersburg, Russia
Joined April 2013
I'm glad I did not table it. Finish your papers:).
Our latest work on SV detection is now published. Congratulations @meleshko_da my former PhD student @cbm_student for leading this! Blackbird: structural variant detection using synthetic and low-coverage long-reads
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Doing some science about marine inhabitants while in Russia:.
mdpi.com
Vibrio sp. KMM 8419 (=CB1-14) is a Gram-negative bacterium isolated from a food-net mucus sample of marine polychaete Chaetopterus cautus collected in the Sea of Japan. Here, we report the structure...
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My final piece of work in US as a graduate student. Life is so different right now.
Our latest manuscript led by @cbm_student alumni @meleshko_da @WeillCornellGS @WCMEnglanderIPM , Blackbird: structural variant detection using synthetic and low-coverage long-reads
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RT @hajirasouliha: Our latest manuscript led by @cbm_student alumni @meleshko_da @WeillCornellGS @WCMEnglanderIPM , Blackbird: structural v….
biorxiv.org
Motivation Recent benchmarks of structural variant (SV) detection tools revealed that the majority of human genome structural variations (SVs), especially the medium-range (50-10,000 bp) SVs cannot...
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RT @spadesassembler: SPAdes 4.0 is released! Since 2022 SPAdes is not related to any institution and is maintained….
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My favourite collaboration with @hagentilgner and Andrey Prjbelski.
Our latest "accepted" manuscript led by recently-graduated @cbm_student @WeillCornellGS Dr. Meleshko of the lab. Fruitful collaboration with my dear friend @hagentilgner! cloudrnaSPAdes: Isoform assembly using bulk barcoded RNA sequencing data
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RT @hajirasouliha: Our new methods paper, Ariadne, is just out @GenomeBiology ! Led by my incredible Ph.D. student @cbm_student @WeillCorn….
genomebiology.biomedcentral.com
Synthetic long read sequencing techniques such as UST’s TELL-Seq and Loop Genomics’ LoopSeq combine 3 $$'$$ ′ barcoding with standard short-read sequencing to expand the range of linkage resolution...
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RT @hajirasouliha: Our recent ccollaborative work with @hagentilgner . led by the incomparable @meleshko_da @cbm_student @WeillCornell ht….
biorxiv.org
Motivation Recent advancements in long-read RNA sequencing have enabled the examination of full-length isoforms, previously uncaptured by short-read sequencing methods. An alternative powerful method...
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RT @hajirasouliha: I have several open positions (at all levels) available in the lab in 2023. Please check the page for details and/or R/T….
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RT @hajirasouliha: Our own @cbm_student @meleshko_da presents a new version of his blackbird algorithm for assembly of SVs using hybrid syn….
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RT @hajirasouliha: Our latest work is now online . led by the great @cbm_student @meleshko_da :) Efficient detection and assembly of no….
academic.oup.com
Abstract. Recent pan-genome studies have revealed an abundance of DNA sequences in human genomes that are not present in the reference genome. A lion’s sha
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The difference between different linked-read platforms is pretty notable. 10X and stLFR have a heavy tail in molecule length distribution. stLFR has mean molecule coverage around 0.4X!
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Wow, my first Nature paper is here! And what a paper it is.
Serratus is published in @Nature!🎉 Planetary viral discovery by analysis of all available RNA sequencing data.
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Today I launched a bunch of "novel" bioinformatics tools to benchmark, and they all have something in common. They write random numbers into the console without any explanation.
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Мне нравится как с точки зрения секвенирования Россия похожа на некоторые страны Африки или Антарктиду. И единственное хорошо исследованное место - это Байкал. Требуем гранты на секвенирование всего и вся.
The entire search was completed in 11-days wall-clock. All software is open-source and the data is freely available. Explore the Open Virome at
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RT @RayanChikhi: Explore Earth’s Virome with Serratus. We uncover 130,000+ new species of RNA viruses, increasing the total known species b….
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"Три дня не пить, налево не ходить", - напутствовала меня медсестра в поликлинике после вакцинации. Очень хорошо!.
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RT @hajirasouliha: Our new method for the recovery of RNA viruses (e.g. Coronaviruses) [led by incomparable @meleshko_da and @akorobeynikov….
biorxiv.org
The COVID-19 pandemic has ignited a broad scientific interest in coronavirus research. The identification of coronaviral species in natural reservoirs typically involves de novo assembly. However,...
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We developed a new tool for the coronavirus assembly using HMMs!.
coronaSPAdes: from biosynthetic gene clusters to coronaviral assemblies #biorxiv_bioinfo.
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RT @spadesassembler: coronaSPAdes combines ideas from biosyntheticSPAdes, rnaSPAdes, metaSPAdes and metaviralSPAdes to improve the resconsr….
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