Jörg Simon Wicker
@joergwicker
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Senior Lecturer - Machine Learning Group - School of Computer Science - University of Auckland @MLAucklandUni - Mastodon / Fediverse: @[email protected]
Auckland, New Zealand
Joined August 2015
New: "AdductHunter: identifying protein-metal complex adducts in mass spectra" https://t.co/6QDRu4oL6D
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New data package: EAWAG-SLUDGE ! EAWAG-SLUDGE contains biotransformation data from activated sludge experiments extracted from 27 scientific articles, including our own paper by Trostel et al. (2023) https://t.co/CF9Fsac6H8
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New publication alert! “enviRule: an end-to-end system for automatic extraction of reaction patterns from environmental contaminant biotransformation pathways” https://t.co/TMxL9Ib3Ma
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New publication alert! ‘Combining predictive and analytical methods to elucidate pharmaceutical biotransformation in activated sludge’ https://t.co/lDRgDlFxi5
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Throwback Tuesday! As part of the enviPath+ project, we aim to bring the enviPath platform to a new level. We held a scoping workshop in July to understand how to best meet the needs of our users and collaborators. We thank the participants for their valuable inputs!
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Throwback Tuesday! The whole enviPath team was present at the International Conference on Chemistry and the Environment 2023 in Venice. We organized a workshop around the enviPath platform, featuring talks regarding databases, predictive models, and applications of enviPath.
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But i'll let Catriona tell you in her own words https://t.co/o4VZfDlG0x
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Pleased to have been able to contribute to this work. De novo network analysis reveals autism causal genes and developmental links to co-occurring traits
life-science-alliance.org
Autism is a complex neurodevelopmental condition that manifests in various ways. Autism is often accompanied by other conditions, such as attention-deficit/hyperactivity disorder and schizophrenia,...
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Exciting fully funded PhD opportunity in Auckland, supervised by Katerina Taskova and @DavideMercadan2 , the student will both be in our and Davide's lab. Work on protein design and discovery of new proteins fit for industrial applications. https://t.co/HQ23xuDUKd
wickerlab.org
The Mercadante Group and our lab is seeking an exceptionally motivated individual to join as a PhD candidate in protein design and discovery of new proteins fit for industrial applications. In part…
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Our new automatic rule extraction tool enviRule - extract transformation rules directly from your data set. Soon available in enviPath: https://t.co/irUQSZgbvX
academic.oup.com
AbstractMotivation. Transformation products (TPs) of man-made chemicals, formed through microbially mediated transformation in the environment, can have se
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Analyzing movies and VOCs in cinema audiences' breath - follow-up of our award-winning research. We extracted features from movies and linked them to changes in concentrations of VOCs. Check the article here: https://t.co/ZmbsXOX8NU
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new: "Combatting over-specialization bias in growing chemical databases" https://t.co/iyebCYuNX6
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An unbiased de novo network analysis uncovering causal genes and the developmental intersection between autism and co-occurring traits https://t.co/2LYt6mSY8O
#medRxiv
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How do we identify and overcome over-specialization #bias in chemical databases? Check Katharina Dost's latest publication, joint work with @zacmps, Liam Brydon, Kunyang Zhang, Jasmin Hafner, and Pat Riddle. #cheminformatics
https://t.co/MLQf7QEmKu
https://t.co/xRWhA1Lg9V
link.springer.com
Journal of Cheminformatics - Predicting in advance the behavior of new chemical compounds can support the design process of new products by directing the research toward the most promising...
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While @zacmps ran the experiments for his paper "Hitting the target", he implemented MEMENTO, taking care of parallelization, caching, and checkpointing. We found it really useful for evaluating new methods and decided to publish it:
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Want to do a funded PhD with us “Using Cryptosporidium genomics for investigating outbreaks and disease transmission”. Apply by May 1st
findaphd.com
PhD Project - Using Cryptosporidium genomics for investigating outbreaks and disease transmission at Aberystwyth University, listed on FindAPhD.com
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New research article: Development of a seismic loss prediction model for residential buildings using machine learning – Ōtautahi / Christchurch, New Zealand
nhess.copernicus.org
Abstract. This paper presents a new framework for the seismic loss prediction of residential buildings in Ōtautahi / Christchurch, New Zealand. It employs data science techniques, geospatial tools,...
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Application deadline approaching for two positions to further develop @enviPath, our internationally unique online resource on contaminant biotransformation. Assistant in chemical data science: https://t.co/pdwBXSJNk0 Postdoc in Computational Metabolomics: https://t.co/cWsPBf2au5
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Join us at ICCE 2023 in Venice! We are planning a satellite event at ICCE 2023 - we will introduce enviPath, with theory sessions and hands-on exercises. We will also have an exciting list of speakers! Register now - more updates soon! https://t.co/IpNVHzacDp
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