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Erika Alden DeBenedictis Profile
Erika Alden DeBenedictis

@erika_alden_d

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CEO of @Pioneer__Labs, founder of @Align_Bio, resident @AsteraInstitute Former astronomer 🌎 recovering computer scientist 🤖 current molecular biologist 🧬🧪

California, USA
Joined October 2008
Don't wanna be here? Send us removal request.
@erika_alden_d
Erika Alden DeBenedictis
1 day
How much data do we need to train protein language models that can predict experiments? . TLDR: we need to be much smarter about WHAT data to acquire.🧠 New years of data in the UniRef sometimes help. or hurt! . Check out @AvivSpinner's new paper!.
@AvivSpinner
Aviv Spinner
1 day
3/5 We find performance does not improve monotonically as more data is used at train time! Some years of added data help, others hurt. The models are sensitive y'all. We haven’t hit data saturation yet. Full paper here:
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@erika_alden_d
Erika Alden DeBenedictis
4 days
Going rogue! I love it 💪.
@ginaelnesr
Gina El Nesr
5 days
The MLSB workshop will be in San Diego, CA (co-located with NeurIPS) this year for its 6th edition in December 🧬🔬. Stay tuned @workshopmlsb as we share details about the stellar lineup of speakers, the official call for papers, and other announcements!🌟
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@erika_alden_d
Erika Alden DeBenedictis
9 days
RT @Align_Bio: Just over a week left to apply: Align is hiring a Scientist to run and improve GROQ-seq at NIST (Gaithersburg, MD). Build in….
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@erika_alden_d
Erika Alden DeBenedictis
10 days
RT @Align_Bio: Just over a week left! We’re hiring a Research Associate to help run GROQ-seq at BU’s @DAMPLab. High-impact, automation-driv….
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@erika_alden_d
Erika Alden DeBenedictis
11 days
Check out the post: Contains:.- How we use it.- How to set it up yourself.- Information on the corpus we've amassed - if you're an AI researcher and think you could get insights out of this, reach out!.
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@erika_alden_d
Erika Alden DeBenedictis
11 days
Thanks so much to ElevenLabs for their original Notion ELN template!! 🫶🙏 We have gotten such good use out of it, and by writing this guide I hope to pay it forward!.
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@erika_alden_d
Erika Alden DeBenedictis
11 days
An AI-ready lab notebook for life science doesn't need to be complex or expensive. At @Pioneer__Labs, we use a lab management system built entirely with generic software tools. It's simple, cheap, and easy to modify. See our now how-to post ⬇️
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@erika_alden_d
Erika Alden DeBenedictis
16 days
RT @sonofalli: ever since I was a little girl I always dreamed of spending all day in one of these
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@erika_alden_d
Erika Alden DeBenedictis
18 days
RT @BiologyAIDaily: A Data Guided Approach To Building An ML Ready Protein Expression Dataset. A new project aims to create an openly avail….
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@erika_alden_d
Erika Alden DeBenedictis
22 days
It's actually wild that protein engineering is this global!!. Looking at the registrants, damn, this is gonna be fascinating!!! 🍿👀😃.
@Align_Bio
The Align Foundation
22 days
The 2025 Protein Engineering Tournament didn’t just take shape, it practically folded itself overnight - and registration goes until Oct 17! .Already:.✅ 94 teams.🌍 20 countries spanning 5 continents. This week's signups: @nvidia, @UWproteindesign, @EliLillyandCo,.
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@erika_alden_d
Erika Alden DeBenedictis
23 days
RT @AsteraInstitute: “Mars is galactic gardening for beginners”. Astera Resident @EdwinKite is building a modern research agenda for terraf….
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@erika_alden_d
Erika Alden DeBenedictis
23 days
RT @Pioneer__Labs: What are we building? Follow along with our open science updates and read about our first target microbe for Mars. https….
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@erika_alden_d
Erika Alden DeBenedictis
24 days
Would love to hear what people think of this anonymity design. Any edge cases we haven't thought of?.
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@erika_alden_d
Erika Alden DeBenedictis
24 days
In general, most people seem to want to share they're participating. The exception seems to be that some for-profits have reasons why they don't want to reveal they entered if they don't win. I'm excited this level of anonymity allows them to participate! Dying to see how they.
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@erika_alden_d
Erika Alden DeBenedictis
24 days
If you want Align to tag you in social posts, let us know! Email tournament@alignbio.org. More discussion = more community = better learnings 💪
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@erika_alden_d
Erika Alden DeBenedictis
24 days
It is also up to you if you want to share that you’re participating at all. If you choose to share your participation, your results are still anonymous if you aren't a top competitor.
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@erika_alden_d
Erika Alden DeBenedictis
24 days
Who-scores-what is anonymous by default, except for the top scoring teams, who are automatically de-anonomyzed.
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@erika_alden_d
Erika Alden DeBenedictis
24 days
FAQ: Is the Tournament anonymous? . Here's how it works: ⬇️.
@Align_Bio
The Align Foundation
25 days
1/4.🚀 Announcing the 2025 Protein Engineering Tournament. This year’s challenge: design PETase enzymes, which degrade the type of plastic in bottles. Can AI-guided protein design help solve the climate crisis? Let’s find out! ⬇️. #AIforBiology #ClimateTech #ProteinEngineering
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@erika_alden_d
Erika Alden DeBenedictis
24 days
By this time next year, either: . 🏆 we'll have engineered PETase enzymes actually work industrially & recycle plastic. or we'll know that AI-for-proteins is still a bit underbaked 😜. Excited to see what happens!!!! 😬 . Spread the word ⬇️.
@Align_Bio
The Align Foundation
25 days
1/4.🚀 Announcing the 2025 Protein Engineering Tournament. This year’s challenge: design PETase enzymes, which degrade the type of plastic in bottles. Can AI-guided protein design help solve the climate crisis? Let’s find out! ⬇️. #AIforBiology #ClimateTech #ProteinEngineering
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