EpiGraphDB
@epigraphdb
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A database and data mining platform for health data science
MRC-IEU, University of Bristol
Joined December 2019
4 year PhD studentship project fully funded by Roche on literature mining with LLMs and knowledge graphs https://t.co/OiXIk9S0np
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We are adding a user experience survey ( https://t.co/VylJw7nb1Z) to the ASQ platform https://t.co/IBsIiWt8IC, which is a natural language query interface to EpiGraphDB. Please give ASQ a try and provide your valuable feedback via the survey!
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Application closes in 14 days for this 3-year data scientist position in ML and NLP at @mrc_ieu. Get in touch if interested! #machinelearning #NLP
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Also pleased to share our preprint led by @YiLiu6240 on triangulating evidence in health sciences with Annotated Semantic Queries ( https://t.co/qXy9TYspBf)
@mrc_ieu
medrxiv.org
Integrating information from data sources representing different study designs has the potential to strengthen evidence in population health research. However, this concept of evidence “triangulati...
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Pleased to share our preprint led by @SobczykMaria comparing Mendelian randomization studies and randomized controlled trials using electronic databases with @mendel_random @mrc_ieu
medrxiv.org
Mendelian Randomization (MR) uses genetic instrumental variables to make causal inferences. Whilst sometimes referred to as “nature’s randomized trial”, it has distinct assumptions that make compar...
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R package [epigraphdb]( https://t.co/q7LXdoO07b) for querying [EpiGraphDB]( https://t.co/Gf2ejUQMzj) data has been updated on CRAN to v0.2.3 (a minor update). More updates for EpiGraphDB are in the work and to be released this year.
cran.r-project.org
The interface package to access data from the 'EpiGraphDB' platform. It provides easy access to the 'EpiGraphDB' platform with functions that query the corresponding REST...
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We are seeking two health data scientists and a database manager to join @mrc_ieu in Bristol - please get in touch if interested!
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New postdoc opportunity in Health Data Science at the MRC Integrative Epidemiology Unit (@mrcieu) at University of Bristol. Get in touch if interested!
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New data management post working on the @OpenGwas database in Bristol https://t.co/xH4hH0mV5h
@mrbase2 @BrisCancerEpi @mrc_ieu
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EpiGraphDB version 1.0 https://t.co/5Ky7wzPpd8 has been released. Here is the blog post summarising key features https://t.co/cWdwj9N1po.
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Now live! Mendelian Randomization dictionary, with >100 clear & comprehensive definitions & descriptions for doing, understanding & interpreting MR studies. @Caketin_Wade @DeborahLawlor2 @MCarol_Borges @explodecomputer @jack_bowdenjack Available here:
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Fancy a one-stop shop for data mining the published literature which also enables analyses (including Mendelian randomization) of publicly available multiomic data? If so, EpiGraphDB could be for you
academic.oup.com
AbstractMotivation. The wealth of data resources on human phenotypes, risk factors, molecular traits and therapeutic interventions presents new opportuniti
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As part of the @epigraphdb build process, we have inadvertently developed a universal Snakemake/Docker pipeline to create a @neo4j graph. Includes predefined schemas, QC steps, fast import, node conflict resolution. Reuse & collaborations most welcome :)
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IEU blog: reducing drug development costs https://t.co/TfRIt7PKKV
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Our 4-year Wellcome-funded PhD programme in Molecular, Genetic and Lifecourse Epidemiology is open for applications to start in Oct 2021 https://t.co/sSUGIcx1iG
@BrisMolGenetic @mrc_ieu @BrisPopHealth
findaphd.com
Apply for a PhD: Wellcome Trust 4-year PhD Programme in Molecular, Genetic and Lifecourse Epidemiology (MGLE) at University of Bristol
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Final reminder of this data science senior research associate post closing tomorrow!
We are seeking an enthusiastic health data scientist to work on drug target prioritization at the @mrc_ieu in Bristol
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How will Brexit impact on food safety in Britain? New blog from @marina_vab @PlotThiggins discusses their @JGIBristol data visualisation competition entry which used @foodgov data https://t.co/PqZKNTg5Id
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The `epigraphdb` R package is in the top 40 new CRAN packages. https://t.co/h1w6wh7YmS
rviews.rstudio.com
One hundred forty-six new packages stuck to CRAN in August. Below, are my ‘Top 40’ picks in eleven categories: Computational Methods, Data, Genomics, Insurance, Machine Learning, Mathematics,...
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