Chris Markiewicz
@effigies
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Reproducible science, neuroinformatics and scientific Python.
New Hampshire, USA
Joined September 2016
Pretty much been off Twitter for most of a year anyway, but in case I feel the urge, I'll be moving to
mas.to
479 Posts, 108 Following, 261 Followers · Researcher @ Stanford
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On @OpenNeuroOrg, we're implementing a data retention policy intended to ensure that changes to datasets don't get accidentally abandoned. I wrote up how to see what changes are in your draft using @datalad:
gist.github.com
How to view changes to an OpenNeuro dataset draft. GitHub Gist: instantly share code, notes, and snippets.
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After hundreds of #OHBM2022 attendees responded to the COVID poll, I think it makes sense to talk about immediate impact beyond infection now: For how long have you been sick enough that you could/should not work?
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With #OHBM2022 coming to a close, what impact had COVID? Please share widely! Thx!
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If you need to pick up a poster that @AdinaKrik had printed for you, come find them outside the @OhbmOpen Open Science Room! Thanks to @SudoNeuroSci for delivery! #OHBM2022 #OHBM22
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Here is a new step-by-step guide to help you craft minimal reproducing code examples for efficient bug reporting: https://t.co/i1ErPCYlBw 1. include all import statements 2. drop any unnecessary code constructs 3. use a synthetic dataset Thanks @ArturoAmorQ for the contrib!
scikit-learn.org
Whether submitting a bug report, designing a suite of tests, or simply posting a question in the discussions, being able to craft minimal, reproducible examples (or minimal, workable examples) is t...
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1/n It's finally online! You can read all about the PET BIDS extension here: https://t.co/7V2NA97tLi Together with many PET experts we developed the positron emission tomography extension for the Brain Imaging Data Structure (BIDS). @OpenNeuroPET @CopenhagenNeuro @Rigshospitalet
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As with all publicly funded projects it is necessary+useful to assess their relevance for continued funding. We at @datalad would be grateful to learn how you rely on the software. Anything is interesting+helpful, maybe as simple as the total size or number of files tracked. Thx!
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@effigies @rotembot @russpoldrack @oesteban @torwager @pierre_bellec I've put together a little tool that rearranges fmriprep (21.0.0 or later) reports to make them easier to review in bulk: https://t.co/5D3WvlLbW3 We also have some thoughts on QA interpretation here:
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I am not sure who needs this but template flow is really useful. https://t.co/W2lFEncOl4
gist.github.com
Use TemplateFlow API to read self-defined directory with files in TemplateFlow naming scheme - hijack_templateflow.py
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We are looking for a security focus back-end IT person to build the future of EU data sharing - 4 years guarantee for now! info here https://t.co/NNQLqdKA5b
#WomenWhoCode #FreshlyGraduated
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An old laptop I've been using for testing and long-running jobs has died. Any recommendations for a small off-the-shelf box with reasonable specs? Looking at a Lenovo M75n.
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Join us as developer in building @OpenNeuroPET, a plaftform for PET data sharing with @CyrilRPernet, @martinnorgaard_ and @GitteKnudsen2 at @CopenhagenNeuro @Rigshospitalet See the call here:
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FAIRly big: A framework for computationally reproducible processing of large-scale data https://t.co/ywVr0AetGb
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Hi all! We have an opening for a software engineer at TReNDS, required proficiency in Matlab & Python, this person will lead the next phase of the GIFT/FIT tools and more. Come join us! If interested please email or DM me.
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Twelve-Year-Old Linux Vulnerability Discovered and Patched
schneier.com
It’s a privilege escalation vulnerability: Linux users on Tuesday got a major dose of bad news—a 12-year-old vulnerability in a system tool called Polkit gives attackers unfettered root privileges on...
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Since the great @AFNIman has retired, we are looking for someone to take over the keys to the NIH fMRI analysis kingdom. The group is extremely well supported - huge opportunity to make an impact on the future of fMRI/multimodal analysis. Apply here:
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