Deepak Unni
@deepakunni3
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(Software | Data | Knowledge Graph) Engineer. Working in the Personalized Health Informatics group @ISBSIB @SPHN_ch. Thoughts and views are my own.
Basel, Switzerland
Joined October 2013
Excited to share our latest work. We introduce an improved version of NanoSeq, a duplex sequencing protocol with <5 errors per billion bp in single DNA molecules, and use it to study the somatic mutation landscape of oral epithelium in >1000 people. 1/n
medrxiv.org
As we age, many tissues become colonised by microscopic clones carrying somatic driver mutations ([1][1]–[10][2]. Some of these clones represent a first step towards cancer whereas others may...
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@LearningSPARQL @triggan Entry point to all the related material (including a test suite for implementers and pointers to implementations) at:
github.com
Specification of an extension to SPARQL for handling literals that capture composite values (lists, maps, etc.). - awslabs/SPARQL-CDTs
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We're excited to announce the 2024.1 release of the SPHN Semantic Interoperability Framework! Designed to represent health data in a #KnowledgeGraph adhering to the FAIR principles. What's NEW? Data provenance, omics, microbiology, and more https://t.co/lvSPoPMvpG
#RDF #FAIRData
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Bridging Clinical and Genomic Knowledge: We just published a pre-print describing the extension of the SPHN #RDF Schema for seamless integration and FAIRification of omics data. Great collaboration with @TheHyveNL and the @SPHN_ch network experts 👏🙏 https://t.co/XtXFi2vRnq
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Exciting opening at @ISBSIB (@ELIXIREurope CH) to do meaningful work on knowledge graphs and LLM. By meaningful, I mean both semantically accurate and worth our dedication for basic science, human health & biodiversity preservation! Apply or RT pls!
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This is our last post on X, as it has become incompatible with our Code of Conduct. Read more at https://t.co/A2F0PRUvdq, and please join us at any of the alternative sites suggested. #OpenSource #bioinformatics #OpenScience
open-bio.org
As of November 21, 2023, the Open Bioinformatics Foundation and BOSC will no longer post on Twitter/X. Although in the past it was a useful social medium, it is no longer compatible with our values, …
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K. Crameri, Director SPHN DCC at the #LifeScienceClusterBasel “A sustainable, digital healthcare system needs a sound data basis: For further improvement of the quality of care, a more efficient management of the system, as well as for data-driven biomedical research endeavors."
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HPO goes international in our new publication «The Human Phenotype Ontology in 2024: phenotypes around the world» https://t.co/RHMXT3Mim8
academic.oup.com
Abstract. The Human Phenotype Ontology (HPO) is a widely used resource that comprehensively organizes and defines the phenotypic features of human disease,
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We now have a BOSC group on LinkedIn--please follow us! https://t.co/CUCBUEk2jX
#Bioinformatics #opensource #OpenScience
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Fantastic initiative. Clean, high-quality data is the lifeblood of big data and AI, affecting the reliability of insights and predictions. Knowledge graphs offer a compelling solution. At @ISBSIB we have started but also need others to reap full rewards: https://t.co/6FVwJfDbqo
academic.oup.com
Abstract. The SIB Swiss Institute of Bioinformatics (https://www.sib.swiss/) is a federation of bioinformatics research and service groups. The internation
NSF invests $26.7 million in building the first-ever prototype open knowledge network | NSF - National Science Foundation
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SPHN Factsheet 2023: take stock of the solutions offered by this nationwide initiative to make health data #FAIR for secondary use – a project led by SAMS and SIB 👉 https://t.co/SMg5WkLtib
#BioMedIT #FAIRdata
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New video! 🚨 Hear firsthand how @mattmight at @uabprecisionmed used the @MonarchInit resource and ultimately shortened his son's diagnostic and therapeutic odyssey. (ORIP support through R24OD011883) #ORIPResources
https://t.co/tFhfVNUqVR
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Unlocking healthcare data for secondary use is a complex task. Join our @SPHN_ch webinar to get to know the established infrastructures and processes at the🇨🇭University Hospitals. @patrickhirschi_ will present the work at @Unispital_USZ on 18 Oct (11-12). https://t.co/JAxEMxXUon
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@SPHN_ch is happy to share its new Factsheet 🎉! The 2023 edition illustrates the important hub function of the SPHN-DCC in the developing Swiss Health Data Space and gives an overview on the key infrastructure elements established over the past years: https://t.co/VB2bqZ3gWt
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In case you missed it, the video of @SierraMoxon's BOSC/@bioontologies webinar (LinkML: an open data modeling framework, grounded with ontologies) is at https://t.co/snUfyDeMNx and the slides are at https://t.co/5faknw4dK2
#OpenData #LinkedData #DataModeling #OpenSource
docs.google.com
LinkML: an open data modeling framework, grounded with ontologies Sierra Moxon Staff Software Engineer Environmental Genomics and Systems Biology Division Lawrence Berkeley National Laboratory...
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📣 We are excited to join @OBF_BOSC for an upcoming @iscb Academy Webinar! Join us 10/3/23 @ 11:00 ET where @SierraMoxon will present "LinkML: an open data modeling framework, grounded with ontologies". I don't know about you but we're very excited! 🎉 https://t.co/7lnwFFCna7
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Free BOSC/Bio-Ontologies ISCBacademy webinar Oct 3 @ 15:00 UTC: @SierraMoxon, “LinkML: an open data modeling framework, grounded with ontologies”. https://t.co/OqVVa44BNk
#LinkML #OpenData #Ontologies
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📰🔭SPHN officially ends in 2024 – what’s next? The new #Academies report describes what’s needed to maintain the SPHN #data #infrastructures beyond 2024 and summarizes the needs and expectations towards the future SPHN-DCC. Read more➡️ https://t.co/4bhX3kI6kW
sphn.ch
The Swiss Personalized Health Network (SPHN) initiative coordinates the development of infrastructures for the responsible use of health-related data in research throughout Switzerland. The new...
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Das Gesundheitswesen muss endlich im digitalen Zeitalter ankommen. Dafür braucht es öffentliche Mittel und Rahmenbedingungen für eine konsequente Umsetzung des Once-Only-Prinzips (wie auch in der Motion 23.3601 @Marcel_Dobler gefordert) @FWasserfallen
https://t.co/vtDxrKfNP6
inside-it.ch
Das heutige elektronische Patientendossier bietet in der aktuellen Form keinen relevanten Nutzen, schreibt SP-Nationalrätin Flavia Wasserfallen in ihrer aktuellen Parldigi-Kolumne. Sie nennt 3...
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