Kovács Dávid Péter Profile
Kovács Dávid Péter

@davkovacs10

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Machine Learning researcher

London, UK
Joined September 2014
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@davkovacs10
Kovács Dávid Péter
2 years
💥I am happy to share our work on next gen transferable ML force fields for bio-organic / molecular chemistry. MACE-OFF23 is a series of pretrained MACE models accurately describing molecules in vacuum as well as condensed phase with a wide range of tests.
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arxiv.org
Classical empirical force fields have dominated biomolecular simulation for over 50 years. Although widely used in drug discovery, crystal structure prediction, and biomolecular dynamics, they...
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@davkovacs10
Kovács Dávid Péter
10 months
RT @DrJimFan: Hitchhiker's guide to rebranding:.- Machine learning -> statistical mechanics.- Loss function -> energy functional.- Optimize….
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@davkovacs10
Kovács Dávid Péter
1 year
RT @chaitjo: There's been many new Geometric GNNs in the past couple weeks combining 3D equivariance and topological ideas (simplices, cell….
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arxiv.org
Creating fast and accurate force fields is a long-standing challenge in computational chemistry and materials science. Recently, several equivariant message passing neural networks (MPNNs) have...
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@davkovacs10
Kovács Dávid Péter
1 year
RT @PythonFZ: Check out the interactive demo on Zero Shot Molecular Generation via Similarity Kernels for our prepr….
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@davkovacs10
Kovács Dávid Péter
1 year
RT @karpathy: Have you ever wanted to train LLMs in pure C without 245MB of PyTorch and 107MB of cPython? No? Well now you can! With llm.c:….
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github.com
LLM training in simple, raw C/CUDA. Contribute to karpathy/llm.c development by creating an account on GitHub.
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@davkovacs10
Kovács Dávid Péter
2 years
RT @ask1729: 1/ Introducing a new method, the Gaunt Tensor Product, to improve the efficiency of E(3)-equivariant neural networks and speed….
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arxiv.org
Developing equivariant neural networks for the E(3) group plays an important role in modeling 3D data across real-world applications. Enforcing this equivariance primarily involves the tensor...
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@davkovacs10
Kovács Dávid Péter
2 years
Check out this great summary of our foundation model for chemistry / materials science by @lars__schaaf . This thread hints at the emergent behaviour of our model with applicability well beyond the training domain of crystals. 👇👇👇.
@lars__schaaf
Lars Schaaf
2 years
The first time I used this model I was pretty breath taken. The coolest things: with just a few lines, **anyone** can now run decent atomic scale simulations. Try it out yourself! Details in 🧵.paper:
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@davkovacs10
Kovács Dávid Péter
2 years
And to try the models quickly just install mace from pip install mace-torch. And import them as an ASE calculator. calc = mace_off(model="medium", device='cuda').
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github.com
MACE - Fast and accurate machine learning interatomic potentials with higher order equivariant message passing. - ACEsuit/mace
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@davkovacs10
Kovács Dávid Péter
2 years
As well as tagging all other co-authors who were integral to this project! @IlyesBatatia Nick Browning @venkatkapil24 @w_c_witt @ColeGroupNCL @joshhorton93 @MagdauIoan and Gabor of course!.
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@davkovacs10
Kovács Dávid Péter
2 years
This paper is the final large piece in my PhD journey! . I have to thank to all my co-authors and co-workers without whom it wouldn't have been possible! .In particular @jhmchem co-first author and drug discovery expert.
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@davkovacs10
Kovács Dávid Péter
2 years
Finally and crucially the MACE-OFF23 models are already fast, capable of simulating 3-4 million MD steps / day (3-4 ns with 1 fs timestep). But we will have a new release very shortly with MUCH faster custom CUDA implementation 🚀🚀
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@davkovacs10
Kovács Dávid Péter
2 years
We are of course not limited to small peptides and can simulate larger proteins in explicit solvent such as crambyn with vibrational spectra showing accurate secondary structure (without any extra training like GEMS)
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@davkovacs10
Kovács Dávid Péter
2 years
MACE-OFF23 can also simulate peptides in explicit solvent to obtain free energies or to simulate the folding dynamics of larger peptides such as Ala15. Below is free energy surface of Ala3 in explicit solvent vs Amber
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@davkovacs10
Kovács Dávid Péter
2 years
Water (the biology of physicists) can also be simulated using MACE-OFF23. We get a reasonable description (both spectra and RDF-s). But water is not all, we also simulated 109 different small molecule liquids in NPT to obtain densities roughly matching experimental ones.
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@davkovacs10
Kovács Dávid Péter
2 years
Next we tried the model for molecular crystals computing Raman spectra (with MACE fitted polarisabilities) including nuclear quantum effects and enthalpies of sublimation both closely matching experimental values.
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@davkovacs10
Kovács Dávid Péter
2 years
We validated the models on small molecule torsions and found to almost match the accuracy of the reference method compared to CCSD(T) on 600+ unseen molecules
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@davkovacs10
Kovács Dávid Péter
2 years
We present 3 models of increasing accuracy parameterised for 10 (H C N O P S F Cl Br I) chemical elements trained to reproduce accurate (hybrid DFT with large basis) QM energies and forces. The models are available at
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github.com
MACE-OFF23 models. Contribute to ACEsuit/mace-off development by creating an account on GitHub.
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@davkovacs10
Kovács Dávid Péter
2 years
RT @venkatkapil24: If you are around in London don't forget to swing by @KingsCollegeLon tomorrow afternoon for the @tyc_london new starter….
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@davkovacs10
Kovács Dávid Péter
2 years
RT @maurice_weiler: MACE is my favorite among recent E(3)-equivariant MPNN models. Instead of relying only on the usual two-body messages,….
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