Christophe Avenel
@chrisavenel
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Bioimage Analyst at the BioImage Informatics Facility (BIIF - SciLifeLab / NMI)
Uppsala
Joined March 2017
Exciting news! TissUUmaps 3.1 is now available! 🎉. 1/9 - In this thread, I highlight some of the main new features: AnnData / HDF5 support, side by side display, network visualization, and many more!.Download now: #TissUUmaps #SpatialOmics #Visualization.
tissuumaps.github.io
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RT @ahklemm: We are opening two positions at the Bioimage informatics unit – BIIF!.BIIF is a unit of SciLifeLab , and also part of the Nati….
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RT @EuroBioImaging: 📣Our colleagues at @biif_sweden - part of #EuroBioImaging's SwedishNMI Node - are hiring! They seek 2 new teammates - a….
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RT @EChelebian: What a line-up for the Nobel Symposium on *Spatial Biology in the Genomics Era* @ScienceAcad_swe 🙌.Learned so much from @j….
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RT @martweig: Workshop alert: Together w @GioeleLaManno we organize on April 29 a 1day onsite event at EPFL about computational imaging bas….
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RT @CellCellPress: Now online! Cellular architecture of evolving neuroinflammatory lesions and multiple sclerosis pathology .
cell.com
Spatial mapping of mouse and human multiple sclerosis neuropathology at a single-cell resolution unveils the cellular architecture and dynamics underlying disease evolution.
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RT @ahklemm: Join us! Open position as Bioinformatician with us @biif_sweden. More information on the forum under:….
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RT @EChelebian: 📢 Happy to share that our tool DEPICTER (Deep rEPresentatIon CusTERing) has been accepted in Computers in Biology and Medic….
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RT @arturman_sl: We have developed VoltRon, a spatial multiomic analysis and integration platform in R, with @AltunaAkalin. VoltRon fully….
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📥 Download & Full Changelog: Get the latest version at 9/12.
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🛠️ Project File Validation: Ensure better compatibility with older versions of TissUUmaps with project file validation through tissuumaps-schema 8/12.
github.com
Pydantic schema for TissUUmaps. Contribute to TissUUmaps/TissUUmaps-schema development by creating an account on GitHub.
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Better Drag-and-Drop: Enhanced support for seamless drag-and-drop of images, markers, AnnData files, and GeoJSON regions in the standalone version. 7/12.
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💻 New Installers: Hello macOS (.dmg) and Linux (.deb) installers! Easily install TissUUmaps on all platforms! 6/12.
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🎨 Advanced Marker and Region Options: Customize markers and regions with e.g. new outline and fill choices. 5/12.
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GeoJSON & Geobuf Support: Import regions from multiple GeoJSON files and harness Geobuf for massive datasets. Now including multi-image support! 4/12
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🚀 Performance Boost: Load hundreds of thousands of regions seamlessly with improved rendering performance. No more performance hiccups! 3/12
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New Annotation Tools: In collaboration with Sanofi Digital R&D, TissUUmaps 3.2 introduces fast and intuitive drawing and editing region tools! 🖌️ 2/12
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🚀 Exciting News Alert: TissUUmaps 3.2 Release! 🚀.A thread on some of the new features and improvements! 1/12
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