Chirag Jain
@chirgjain
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Assistant Professor @iiscbangalore. Previously @genome_gov, @GTcse and @IITDelhi
Bangalore, India
Joined September 2014
RT @msikic: Looking for a Pi position in genomics , especilly for related to Ai or computational biology. Join us at the Genome Institute o….
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The 3rd annual Symposium on Big Data Algorithms for Biology (BDBio) is happening this May! Join us for insightful talks and discussions on comp-bio topics. Register, submit abstract, and see program details at . @iiscbangalore @cdsiisc @CBR_IISc
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I enjoyed speaking at the @Indiaacm Winter School training workshop on algorithms for strings, hosted by @AMRITAedu in Coimbatore. Kudos to all the students and the organisers for making the sessions engaging!
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RT @sanchit_misra: Thrilled to share new version of Open Omics Acceleration Framework. Open Omics is envisioned as our performant and produ….
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New method speeds up genome alignment of complete and near-complete genome assemblies in minimap2. Can also be useful for faster read mapping. Github: DOI: Led by @GhanshyamChand5, collab with @sanchit_misra @wasim_galaxy @intel
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Happy to see our method for T2T genome assembly published! It addresses an important limitation of string graph, that is, the contained reads. Led by @skamath5e . "Telomere-to-telomere assembly by preserving contained reads".
SPECIAL ISSUE! This month @genomeresearch publishes a diverse collection of research and review articles in a special issue highlighting advances in long-read sequencing applications in biology and medicine.
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RT @lh3lh3: Pangene now published in Bioinformatics: In addition to showcasing applications (see the 17q21.31 inve….
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Our recent work "Haplotype-aware sequence alignment to pangenome graphs" is now online at @genomeresearch (RECOMB'24 issue). It introduces new algorithms and complexity results for the problem. Led by @GhanshyamChand5 .
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RT @cdsiisc: We send our appreciation to the speakers, poster presenters, participants, student and staff volunteers who contributed to the….
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RT @lh3lh3: Our review paper on "Genome assembly in the telomere-to-telomere era" published online in @NatureRevGenet. It amazes me how muc….
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RT @cdsiisc: Symposium on Big Data Algorithms for Biology (May 31-June 1 2024) is now open for registration and abstract submission [Deadli….
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RT @AW_NGS: Gapless assembly of complete human and plant chromosomes using only nanopore sequencing | bioRxivc Happy @keygene could contr….
biorxiv.org
The combination of ultra-long Oxford Nanopore (ONT) sequencing reads with long, accurate PacBio HiFi reads has enabled the completion of a human genome and spurred similar efforts to complete the...
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RT @cdsiisc: The CDS department at IISC Bangalore invites applications for its summer internship programme, aimed at students pursuing the….
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RT @cdsiisc: Join us at the second annual Symposium on Big Data Algorithms for Biology (BDBio) on May 31-June 1, 2024 @iiscbangalore.The 2-….
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RT @msikic: Happy to present an initial draft of a telomere-to-telomere diploid Indian genome. A joint effort of Jianjun Liu's and my lab s….
github.com
Telomere-to-Telomere diploid Indian Genome . Contribute to LHG-GG/I002C development by creating an account on GitHub.
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RT @msikic: Are nanopore UL reads only long reads we need? We developed Herro AI error correction model that can co….
github.com
HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended). - lbcb-sci/herro
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RT @jmuiuc: The list of #RECOMB2024 Accepted Papers is now live: A huge congrats to all the authors! @RECOMBconf….
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Happy to see that the RAFT method was useful here @skamath5e .
github.com
Contribute to at-cg/RAFT development by creating an account on GitHub.
SM: @nanopore only T2T assembly enable by highly accurate ultra-long reads using off the shelves tools #NanoporeConf
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RT @RECOMBseq: RECOMB-Seq 2024 Call for Papers is out!.Submit via EasyChair. Select “RECOMBSeq 2024” track within R….
recomb-seq.github.io
RECOMB-seq is the RECOMB Satellite Conference on Biological Sequence Analysis
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