Aubrey Weigel
@avweigel
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(she/her) Project Scientist - HHMI Janelia Campus. Views are my own.
Ashburn, VA
Joined June 2013
📢 Submissions are now open for the CellMap Segmentation Challenge. Build the best method for segmenting cellular organelles in vEM using our 289 annotated volumes, 40 organelle classes, and 22 diverse cell and tissue types. 🔗 https://t.co/Sfp1EcbpDu
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🚨 Exciting update for the CellMap Segmentation Challenge! 🚀Launch is now slated for early November 2024! Learn more about the new timeline and what’s ahead here👉 https://t.co/SsJa7jthQN
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We’re thrilled to announce the launch of the CellMap Segmentation Challenge set to go live at the end of October 2024! Sign up for email announcements and be the first to know when the challenge officially launches: https://t.co/e1Ou5HIWri
⭐ Join the CellMap Segmentation Challenge! ⭐ Compete to create the next, best #AI-driven image segmentation model using hundreds of our meticulously annotated high-resolution EM images as training data. Competition starts end of Oct. Sign up today ➡️ https://t.co/t5v0nPnWKM
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🚨 Exciting news! 🚨 Check out this data release of 7⃣ FIB-SEM and segmentation volumes from a single P7 mouse as a preprint on bioRxiv 🐁🎉 👉 https://t.co/boFJNnVoWa
@avweigel @BogovicJohn @korfffly @preibischs @MountainRhoades @yurii_zubov
biorxiv.org
This report presents a comprehensive data release exploring the tissue microarchitecture of P7 aged mice using Focused Ion Beam Scanning Electron Microscopy (FIB-SEM) combined with machine learning...
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Excited to announce the release of our DaCapo paper! @MountainRhoades @janfunkey @cmalinmayor @diane_adjavon @neptunes5thmoon @yurii_zubov 👇🏼Check it out! 👇🏼
DaCapo paper is out! DaCapo is a specialized deep learning library designed to accelerate the training and application of machine learning techniques on large, near-isotropic image data. https://t.co/SpWsmGyXoU
#MachineLearning #DeepLearning #Segmentation #OpenSource #DaCapo
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🥳 submit an abstract now! 🤩
From Images to Knowledge (I2K) is going down @humantechnopole in Milan, Italy, from October 23-25 2024. 🗓️ 🚨Abstract and Workshop submission now OPEN 🚨 https://t.co/rdSpJI0YYN Invited speakers will soon be announced, but most talks will be selected from your🫵 abstracts!!! 📃
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Interested in doing awesome science at an amazing place with a really cool dude? Check these opportunities out! 🤩
🚨 2 open jobs in the @jug_lab - apply now!🚨 👉 Data Scientist and Research Software Engineer in Computer Vision and AI - https://t.co/swkDAgk6HZ 👉 Machine Learning Specialist in Computer Vision and Bioimage Analysis - https://t.co/sYTJmk8QTn What's the difference? A short 🧵
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😱📣 Scie[Twitter|X]: I NEED YOUR HELP!!! 🙏 All of you who ever liked a lecture of mine... All of you who liked one of the courses I teach in... All of you I work(ed) with in one way or another... All of you who see my desperation! 😜 PLEASE retweet! 🙏 https://t.co/iVOX6wAefJ
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Interested in developing molecular tools @HHMIJanelia? Positions available in my lab ( https://t.co/q8NXhBtiK8), please reach out via email if interested!
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Great opportunity!
🚨 Job Alert 🚨 At @humantechnopole we are looking for a Bioimage Analyst ( https://t.co/hrgoZ0Hhsk) and a Research Software Engineer ( https://t.co/WnCxGDIW5h) Join our young and talented team. Our mission is to help others do the right thing... (a short 🧵) 1/4
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Today's the day! Come to my poster during the 1.45pm session to talk about a novel ER-desmosome-keratin complex. Made possible by our amazing collaborators @AICjanelia, @avweigel and @COSEMdata, and Wayne Vogl!
I'll be attending my first ever ASCB #CellBio2022 meeting! If you'd like to chat about #desmosomes and #KeratinFilaments, and their surprising relationship with the #EndoplasmicReticulum, come over to poster P2924 on Tuesday, Dec 6th!
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Join us tomorrow Tue 10:00 AM Room 151A at our #CellBio @ASCB @EMBO session "New Opportunities in Imaging Data Analysis & Integration" with Jan Ellenberg @EllenbergLab @tlemberger @priscaliberali @avweigel @preibischs Maria Polychronidou @molsystbiol 🧵
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Check out the ✨NEW✨ content on OpenOrganelle! Update includes: 📰A News page 🦠An updated Organelles page 🔍A new backend for dataset metadata which is now stored in a queryable PostgreSQL database https://t.co/JtDshOV0PL
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🚨 We are hiring a Bioimage Analyst and Research Software Engineer @humantechnopole in Milan. 🚨 I believe we are a really fun team doing great work together. Check us out and apply if you want to join! 👍 We’re looking forward getting to know you! https://t.co/Ab7L8n0aps
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Explore the segmentations (@CellMapPT) of this dataset jrc_macrophage-2, EM volume (Hess Lab and C. Shan Xu) and more on @OpenOrganelle
https://t.co/JtDshOUt0d.
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Explore the segmentations (@CellMapPT) of this dataset jrc_hela-3, EM volume (Hess Lab and C. Shan Xu) and more on @OpenOrganelle
https://t.co/JtDshOUt0d.
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