Omer Alkhnbashi
@amri2k
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Postdoctoral Researcher @BackofenLab
Freiburg im Breisgau, Germany
Joined September 2009
Anti-CRISPR prediction using deep learning reveals an inhibitor of Cas13b nucleases.
cell.com
Wandera et al. applied deep learning to predict anti-CRISPR protein candidates associated with diverse subtypes of CRISPR-Cas immune systems. The algorithm identified one protein then shown to...
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Spacer prioritization in CRISPR–Cas9 immunity is enabled by the leader RNA.
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RT @Helmholtz_HIRI: People have to constantly set priorities. Bacteria are no different: they must prioritize when combating viruses with C….
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RT @kousikbioinfo: Thrilled to share our work on fine-mapping of immune-mediated diseases (IMD) using regulatory quantitative trait loci (Q….
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RT @realgelhausr: Our publication on benchmarking bacterial #ORF prediction tools for #Ribo-seq data is available. Great work: .@tesamuelle….
github.com
Contribute to RickGelhausen/RiboReport development by creating an account on GitHub.
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CRISPRloci server provides the first resources for the prediction and annotation of all possible CRISPR elements. it integrates a series of advanced machine learning tools within a seamless web interface.
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We're delighted to share our new work on CRISPR-Cas. CRISPRloci: comprehensive and accurate annotation of CRISPR–Cas systems
academic.oup.com
Abstract. CRISPR–Cas systems are adaptive immune systems in prokaryotes, providing resistance against invading viruses and plasmids. The identification of
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RT @tesamueller: Exciting news, our preprint about predicting #ORF in bacteria from #Ribo-seq data is available. Great collab: @realgelhaus….
github.com
Contribute to RickGelhausen/RiboReport development by creating an account on GitHub.
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RT @BackofenLab: Are you interested in developing an online data analysis game in the context of @StreetScienceCo? This student position is….
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COVID-19 Clinical Practice Guidelines Hadhramout Initiative Against Corona Group (HIAC Group) on @ResearchGate:
researchgate.net
PDF | On Apr 22, 2021, Ahmed M Badheeb and others published COVID-19 Clinical Practice Guidelines Hadhramout Initiative Against Corona Group (HIAC Group) | Find, read and cite all the research you...
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RT @SchmitzStreits: Great science yesterday’s & today’s afternoon full of exciting talks on CRISPR beyond defence (SPP 2141 @DFG) – great s….
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RT @GigaScience: A new #usegalaxy tool suite from @BackofenLab for chimeric RNAs associated with specific cancer types. ChiRA: an integrate….
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Many thanks.
Great work, congratulation Omer!.
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In contrast to the existing tools, our approach not only provides the user with the basic statistics on the identified CRISPR arrays but also produces a certainty score as a practical measure of the likelihood that a given genomic region is a CRISPR array.
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Compared to other methods, our tool has a drastically reduced false-positive rate.
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