Agnes Toth-Petroczy
@agnestothp
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Evolution, proteins, computational biology, @mpicbg @csbd
Dresden
Joined August 2014
Accepting applications from highly motivated Masters degree holders with prior research experience to take on interdisciplinary thesis projects in Dresden on the physical properties & biological functions of Biomolecular Condensates. Apply before 24.10.: https://t.co/8pWxOebO16
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🧬 We're excited to host the 13th Symposium on Structural #Proteomics at HT in Milan on 6–8 Oct 25! Join this international meeting with talks on protein structure and interactions by crosslinking MS, HDX-MS, native MS, chemoproteomics & more 👉 https://t.co/sBtEJXSC3t
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Scientific research is at the heart of Israel’s success and has worldwide benefits. Our work will continue despite adversity, says Alon Chen https://t.co/Qvcq1MbEnI
nature.com
Nature - Scientific research is at the heart of Israel’s success and has worldwide benefits. Our work will continue despite adversity.
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Congratulations to the amazing team of @williswows @MScheremetjew, @soumyadeep11194, @AHadarovich and @HongKee and Lena from the Scientific Computing Facility at MPI-CBG! 🎉
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Are you looking for homologous sequences but alignments do not seem to work? SHARK-dive is available as a webserver 🦈: compare any sequences or search against precomputed IDR datasets: https://t.co/aOzm4B65rj
@NAR_Open @csbdresden @PoLDresden MPI-CBG
academic.oup.com
Abstract. Whereas alignment has been fundamental to sequence-based assessments of protein homology, it is ineffective for intrinsically disordered regions
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We conclude that new IDR-specific features and paradigms are needed to accurately classify disease mutations within those regions. Disorder-to-order transitions predicted by AlphaFold3 and motif predictions (e.g. by SHARK-capture) may aid structure-based variant interpretation.
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The distance to the second Methionine discriminates between pathogenic and benign variants associated with the N-Methionine site.
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Mutations at the N-Methionine site are prevalent. Look at the surprisingly high peak at position 1.
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Most mutations in disordered regions are benign but ~12% of pathogenic mutations fall within a disordered region.
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The correlation between the disorder predictors is low.
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It depends which disorder definition (score) is used. Only 7% of residues are consistently predicted as disordered across five different disorder prediction tools. flDPnn under predicts disorder compared to other methods.
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State-of-the-art VEPs tools have lower sensitivity but higher specificity for variants in disordered regions.
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Deep learning tools predict variants in disordered regions with lower sensitivity. Just published by FedericaLuppino, @swantjelenz and @williswows @mpicbg @csbdresden @PoLDresden
bmcgenomics.biomedcentral.com
Background The recent AI breakthrough of AlphaFold2 has revolutionized 3D protein structural modeling, proving crucial for protein design and variant effects prediction. However, intrinsically...
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Exciting news for new #students! This year our #international 'Physics of Life' MSc program will offer 3 #scholarships - share and spread the word! 🤓 Learn more: https://t.co/6xlVZOinsS Students receive €300/month for 1 year, funded by Friends & Supporters of TU Dresden
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Many thanks to the IPF and Friends of IPF for the Innovation Award 2024 and big congrats to the whole team! https://t.co/0r7S0N7hIh
nachrichten.idw-online.de
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I'm thrilled and grateful we have received the EXIST Forschungstransfer grant for commercialization of our DNA-nanotech-powered cell culture material platform DyNAtrix. https://t.co/nPKanGsdJ3
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Now accepting applications for the Max Planck-Weizmann Joint Postdoctoral Program: • Full four-year fellowship • Advanced research facilities and access to leading experts • Enhance career perspectives • Comprehensive family support. For more info and to apply >>
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Who does that? We rented a train JUST for the conference, that will take the participants from Prague to the woods of Bohemia. There'll be talks ON THE TRAIN. In Prague we'll have 5 locations with different atmospheres. #theconferencetoendallconferences Register now:
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🚨Applications are now open for the 'Physics of Life' #MSc at the CMCB! Learn from leading researchers in the field of #biophysics This is an international, interdisciplinary programme that is tuition-free and taught entirely in English. Learn more: https://t.co/WzT0GHq1ao
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News on SHARK-capture. Thanks to @williswows @swantjelenz @soumyadeep11194 @Alberti_Lab_TUD and all co-authors not on X.
mpi-cbg.de
New tool to detect recurring patterns in intrinsically disordered protein regions
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