Martín Beracochea
@_martinbc
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Work at @emblebi
Joined July 2009
Blog post about the "Introduction to Nextflow" workshop in Montevideo last week. This workshop was organized by the lovely people of the ISCB Regional Student Group Uruguay https://t.co/ECLWc4D9aq.
https://t.co/eoDCBY8t94
@nextflow @RSG_Uruguay @JoaqunP58383072
mberacochea.cc
The Regional Student Group Uruguay (RSG-Uruguay) is a non-profit academic group intended to gather young Uruguayan researchers among the bioinformatics and computational biology fields. They have...
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I've recently joined the @nextflowio Ambassador program. I'm very excited to help grow the community around Nextflow. Being originally from 🇺🇾 (but now living in 🇬🇧), I want to help grow the LATAM Nextflow community. BTW, I'm on the other place too
🎉 We are excited to kick off the 2025 Nextflow Ambassador Program with a vibrant, diverse new cohort from 35+ countries! 🌍 Stay tuned for updates and inspiring stories from their journeys! ✨ https://t.co/VazX3pgfv3
#Nextflow #NextflowAmbassadors
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Join EMBL-EBI as an IT Procurement Specialist! Lead tenders for IT hardware/software, ensure value for money, and support sustainability goals. Collaborate with IT, Finance & Legal teams to drive procurement excellence. #Procurement
https://t.co/tZMs7p7Qwy
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🚀 We're hiring a Full Stack Software Developer for the RNA Resources team! Work with cutting-edge tech (Django, React, Kubernetes) to develop world-leading RNA databases like Rfam & RNAcentral. Shape RNA research globally! #FullStack #DeveloperJobs
https://t.co/4uWWkH3maz
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Join our #webinar next week to discover MGnify Proteins, a new data resource for proteins identified through metagenomic analysis. Registration is free but essential: https://t.co/flRA6z23o3
#Bioinformatics #DataScience #Webinar #microbiome @MGnifyDB #metagenomics @emblebi
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Join @vagkaratzas on the 13th of November for a webinar: how our MGnify Proteins resource helps with exploration of the metagenomics sequence space. He'll demo newly released ways to query the dataset, and MGnifams - a new set of protein families derived from it.
We have a number of exciting webinars over the next month, which will go into more depth about several @emblebi resources including @uniprot @MGnifyDB @ebi_jdispatcher. You can also explore mouse phenotyping data with the @impc Find out more: https://t.co/3rVKMr1p8m
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This was a huge effort, and I’m thrilled it’s finally out. :)
MGnify Proteins – our vast database of protein sequences derived from metagenomic sequencing – is now accessible via the web ( https://t.co/ivZX5tEiED) and via @googlecloud BigQuery Public Datasets. For the full news, see https://t.co/R3UwtHXUR3
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Pablo Cuevas 🇺🇾 se retiró a sus 38 años. Campeón de 6 títulos ATP en singles y de Roland Garros en dobles. Fue N°19 del mundo. Un coleccionista de grandes puntos. Disfruten. https://t.co/6DXF5N5jdG
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🚀New update to #AlphaFold Database: Foldseek now integrated! Peer deeper into evolution with new structure-based search feature to find similar proteins with remote homology. The search includes experimentally-determined protein structures from @PDBe. https://t.co/9L0RGX0CPx
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🚨 UNDERCOVER: A few weeks ago I visited a salmon farm on the Faroe Islands– what I saw shocked me– it's an environmental and social disaster, it cannot go on. Yet Bakkafrost in the UK are certified @rspcaassured– @RSPCA_official, do the right thing and drop the scheme 🎣🍣
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Coordinator @robdfinn was invited to present @BlueRemediomics developments again at #ISME19 in the marine ecology session - shown here is the updated version of the marine genomes catalogue in @MGnifyDB
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🥁 The #NextflowSummit program is finally here! Get ready for an exciting gathering in Barcelona from Oct 30 - Nov 1, where innovation meets expertise🌟 ⏳ Hurry - only 2 weeks left to snag a 20% early-bird discount. Don’t miss out—secure your spot now: https://t.co/3do8GUr0e8
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We are releasing OMG📷, an Open MetaGenomic dataset on @huggingface. Similar to FineWeb for NLP, OMG is a massive dataset for open-science in genomics. We train a genomic language model gLM2 on OMG, demonstrating new capabilities like unsupervised protein-protein interaction.
Introducing the 😱OMG dataset and 🤖gLM2! OMG is a massive Open MetaGenomic corpus totaling 3.1Tbp of data and 3.3B proteins. We train gLM2, the first mixed-modality genomic language model, on OMG. 1/🧵 #BioML #AI4Science
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Introducing the 😱OMG dataset and 🤖gLM2! OMG is a massive Open MetaGenomic corpus totaling 3.1Tbp of data and 3.3B proteins. We train gLM2, the first mixed-modality genomic language model, on OMG. 1/🧵 #BioML #AI4Science
We are thrilled to make the OMG dataset and gLM2 models available for the research community! Check out our latest preprint at https://t.co/rRmoN3NCbI (BioRxiv link coming soon)
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mettannotator is a nextflow pipeline that generates an exhaustive annotation (GFF) of prokaryotic genomes. https://t.co/Ucef0GTbyg
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We've just released nf-test 0.9.0, with all the features described in our preprint! Check it out! 🚀 Thanks to all contributors!🙏 @nf_core @nextflowio Changelog:
github.com
What's Changed Update resources.md by @sateeshperi in #207 Update resources.md by @sateeshperi in #212 Delay launchdir init until test execution by @jmuhlich in #214 Create mock.nf in project ...
🎉 We are excited to announce the preprint of nf-test 🚀 What began as a side project on a rainy weekend is now used by dozens of pipelines and >55,000 downloads🙏 (1/8) https://t.co/6mBV9xbvFi
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The #NextflowSummit Barcelona lineup is finally here! 🎉Meet some of our speakers:
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⏳ This is just a sneak peek! Don’t wait—secure your ticket now and enjoy a 20% discount! 🎫🔥 Check out the full lineup of speakers here: https://t.co/TZb47dV4FI
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Do not miss the mettaannotator, prokaryotic genome annotation pipeline: @Microbes
biorxiv.org
Summary In recent years there has been a surge in prokaryotic genome assemblies, coming from both isolated organisms and environmental samples. These assemblies often include novel species that are...
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