Trevor Bringloe
@TBringloe
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I look at genomes and try to understand evolution. My passions: marine arctic biodiversity, seaweed, climate change, learning about the universe, being a dad.
Fredericton, NB, Canada
Joined August 2014
RT @miwipe81: 2-million-year-old DNA how do you analyse such DNA? Are you interested in understanding how we overcame the challenges and ev….
nature.com
Nature - Analysis of two-million-year-old ancient environmental DNA from the Kap København Formation in North Greenland shows there was an open boreal forest with diverse plant and animal...
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RT @jbburant: #GradStudents are arguably *the* primary producers of #research output at Canadian universities, and core contributors to the….
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RT @molecology: New in ME.Whole genome data of North Atlantic kelp populations and the first draft genome of Alaria esculenta reveal high l….
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I tried to automate the full pipeline and made an elaborate mess of it, but hopefully this will help with getting started on similar WGS analyses:
github.com
WGS-Nuclear and Organellar Variant Caller for Biodiversity Discovery - tbringloe/WGS-NOVAC
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This went through 4 desk rejects, 1 reject after one round of review, and finally a second round of review with Mol Ecol with a complete (and warranted) overhaul of the analysis.
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This a follow up to our PNAS paper forwarding the idea that the Arctic flora survived in unique Greenlandic refugia. WGS suggests the Arctic flora is evolutionarily distinct, not simply recolonized from Atlantic/Pacific pops. We need more Arctic research!
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"Whole genome population structure of North Atlantic kelp confirm high latitude refugia." We present a draft genome for Alaria esculenta and mine ~1.9 million nuclear SNPs to unravel pop. structure across the Atlantic. OA to come, and full text now on RG.
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First day full time with the Department of Fisheries and Oceans Canada.
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RT @iheartseaweed: What an amazing opportunity to talk about the importance of #seaweed biodiversity and #Arctic kelp forests, and the new….
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A fantastic collaboration, I should add, led by phycologists at the National University of Ireland, Galway.
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Some applied science, leveraging #wholegenome data to identify geographic provenance of the North Atlantic #kelp Alaria esculenta; in short, we need nuclear SNPs. More to come on the evolutionary backstory! .
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RT @evoecolab: Grad students & postdocs JUST started a petition to the govt: They request: 1) 48% ⬆️ funding level….
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Meredithia microphylla, Håkonsund, Norway. Tusen takk to Line LeGall and Jose Utge for the dives and lovely meals.
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RT @moninya: I finally got my first permanent full time job this month. 20 years after earning my PhD. No wonder scientific researchers are….
smh.com.au
Within a week of giving birth, neuroscientist Natalia Egorova Brumley was holding her baby in one hand and typing a grant application with the other. She was trying to save her career.
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Our article modelling Arctic marine forest distributions under climate change is now featured in a special virtual issue of @GlobalChangeBio check it out!.
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Late night processing some Arctic reds (Odonthalia dentata among others) collected at a Nova Scotia isotherm (4oC dive :0), cheers to @SeaweedCanada suffering through the cold. Hopefully some genomic work ahead ;)
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