Rohan Misra
@RohanMisra
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Joined February 2009
Binarized gene expression data can be concatenated with chromatin accessibility data for effective and integrated cell clustering @zhengdy @rohanmisra @EinsteinMed #BiotechNatureComms
https://t.co/EtvnDSb6Vx
nature.com
Nature Communications - Individual data types in a single cell multi-omic assay are often processed and clustered independently before combined for further analysis. Here, authors showed that...
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Today is the 6th anniversary of the R language. R 1.0.0 was released on February 29, 2000. R 4.3.3 was released today. Happy anniversary, #Rstats!
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What single-cell RNA-seq papers look like to me, a non single-cell RNA-seq expert.
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Me: Hi yes I’d like a large coffee please Europe:
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Me trying to find a variable name for my data frame:
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Lab scientists! Bioinformaticians really suffer in the heat, please remember to leave out a bowl of RAM and some spare cores to help us cope
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Steal someone's wallet, and they'll be poor for one week. Teach them science, and they'll be poor for the rest of their lives.
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We are very excited to announce scverse ( https://t.co/B4lDGfWDPQ), a new consortium around the core Python packages for single-cell omics data analysis. scverse is a cross-lab effort to ensure the longevity and interoperability of the single-cell analysis ecosystem in Python.
scverse.org
Foundational tools for single-cell omics data analysis
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Overhead today: “it’s easy to detect if someone is trying to run a Bitcoin miner on our scientific compute cluster because it’s makes efficient use of the available CPU and memory”
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I feel like 80% of my "data scientist" or "bioinformatics" work is just counting stuff and making distributions so I can eyeball how to classify the counts. The other 80% is copying data and installing weird packages.
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I heard that UMAPs are sus so I used @lpachter lab's supervised dimensionality reduction tool Picasso to generate a much more realistic picture of gene expression in the brain. #singlecell #Bioinformatics
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It’s only astrophysics if it’s from the Astrophysique region of France, otherwise it’s sparkling Astronomy.
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