Peter Hickey
@PeteHaitch
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Senior Research Officer leading the bioinformatics for the Single Cell Open Research Endeavour (SCORE) at @WEHI_research
Melbourne, Victoria
Joined December 2010
A comment in an old script: "This produces a warning ... but I think it's safe to ignore it." Narrator: It was not safe to ignore it.
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Come work with the amazing Belinda Phipson (and me) at @WEHI_research analysing data from Visium, Xenium, STOmics, MERSCOPE ... a whole raft of spatial omics techonologies! A great opportunity for methods development and to work in a supportive team
We are looking for a postdoc bioinformatician to work on cutting edge spatial omics analysis and methods development. This is a joint role with my lab in Bioinformatics and Advanced Technology at WEHI. There will be really cool spatial data to play with!
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We're advertising for a Bioinformatics Research Assistant to work with me at @WEHI_research to process and analyse data from a range of single-cell and spatial 'omics technologies. Full details of the role & how to apply:
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BioC Asia 2022 presentations are now available for viewing on YouTube: https://t.co/NhOYVUWKtH
@Bioconductor #rstats
youtube.com
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Benchmarking single-cell hashtag oligo demultiplexing methods https://t.co/SuNaRtAkTt
#biorxiv_bioinfo
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We are advertising a 2 year postdoc position to work on data from cutting edge spatial technologies. This is a joint position with @ml_labat at WEHI. Level A6-A8 (AUD $93,415 – $100,270). More details here:
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Want a low-cost estimate of DNA methylation levels compatible with parallel transcriptomics in single cells and low-input samples (eg colonies, organoids)? Try our free-to-access protocol for scTEM-seq:
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What a week! #ABACBS22, #COMBINE22, #SBEI2022 and Clinical Informatics. It’s been so good to see y’all again, I have lots of feelings & thoughts that I’m too tired to put into clear words. But I’d like to write some while it’s fresh. 1/6
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Jianan Wang from the Speed Lab @WEHI_research tells us about the CMDdemux method for dealing with #scRNAseq HTO data #biocasia2022
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First Indigenous Bioinformatics SIG as part of the National Indigenous Genomics Network. Super excited to be working with all these guys. Plenty of work to do
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2 great talks in a row from @BelindaPhipson lab members at #biocasia2022 1. @Givanna90 presenting Spectre ( https://t.co/0SisHQZh5N) for analysing high dim cytometry and imaging data 2. Melody Jin showing us how estimate sex in scRNA-seq data with cellXY
github.com
R package to predict sex of single cells and identify Male/Female doublets using machine learning approaches - phipsonlab/cellXY
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Another incredible @Bioconductor package #spectre to check out if you're dealing with single cell imaging and cytometry data. Presented by Giovanna Putri https://t.co/pmC6Y8Iyfo
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@realAaronLun @Bioconductor If you want to start peaking underneath the hood
github.com
Single cell analysis in Javascript. Contribute to kanaverse/scran.js development by creating an account on GitHub.
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Elijah Willie presenting FuseSOM for fast clustering of highly multiplexed in situ imaging cytometry at #biocasia2022
https://t.co/POD48WdKVv
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Want to help others in the @Bioconductor community? The Working Groups are a great place to start: https://t.co/21Fdj6Q5Yb
#biocasia2022
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A method for stabilising the XX karyotype in female mESC cultures An #OpenAccess Research Article from Andrew Keniry, Marnie Blewitt @BlewittMarnie and colleagues @WEHI_research
https://t.co/SZ0f9QAM2u
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Are you interested in spatial technologies and bioinformatics? We are advertising a joint position between Personalised Oncology and Bioinformatics, to be based in my lab at WEHI. Apply here:
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Great talk by @plbaldoni looking at bootstrap replicates from salmon/kallisto and utilizing this variability in the context of differential transcript testing with edgeR #biocasia2022
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#biocasia2022 For people wanna do DTE analysis, try catchSalmon() or catchKallisto() from edgeR, and scale counts for better FDR control! Very clear and inspiring talk from @plbaldoni
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