NeuroJSON
@NeuroJSON
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Scalable, searchable and verifiable neuroimaging data exchange platform. Funded by the NIH under grant#U24-NS124027 (PI:@FangQ) 🖥️ Github:https://t.co/0ZL3tSAJ3H
Joined November 2020
Here is our manifesto towards open-data sharing read in details https://t.co/1LiMHC5wxX
neurojson.org
NeuroJSON - Scalable, searchable and verifiable neuroimaging data exchange platform
Here are the 5 guiding principles of @NeuroJSON: 1.Open-data MUST BE provided in "source-code" format 2.Open-data MUST BE human-understandable 3.Diverse data formats do harm to #openscience and #opendata 4. Small is beautiful 5. Metadata is your data https://t.co/LYHfwUl6Pb
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A write up on the overall NeuroJSON platform architecture read more at https://t.co/SgcECarYkX
neurojson.org
NeuroJSON - Scalable, searchable and verifiable neuroimaging data exchange platform
I prepared the below diagram for my @NeuroJSON poster presented at #OpticaBiophotonics24 it is a nice visual on the overall architecture we created at https://t.co/hleSEc2inC, and deserves further explanations on many of the ideas behind read more https://t.co/TIbvlUED8C
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Here is a video tutorial on how to use #jdata #python module to list, retrieve, query and download @BIDSstandard #neuroimaging datasets
with the new #jdata module, one can now access the rich @BIDSstandard #neuroimaging datasets on https://t.co/hleSEc2inC via #RESTAPI see an animated demo to find out how easy it is to query @OpenNeuroOrg datasets, retrieve metadata, filter data, and download data files on-demand
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#Python #JData v0.6.0 is only 25kB in size, but it gives one the ability to download/query the 1000+ neuroimaging datasets via #REST-API inside Python get it today pip install jdata https://t.co/HBx93Sumbp
pypi.org
JSON/binary JSON formats for exchanging Python and Numpy data
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Tutorial Part 3 - how to dynamically access/download/cache https://t.co/f0R6nMhr3r datasets on @GnuOctave
because #JSONLab is compatible with both @MATLAB and @GnuOctave, exactly the same REST-API access can be done in Octave here is the 3rd part of the tutorial using Octave
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A lightweight and cloud-friendly way to access and process large complex @OpenNeuro @BIDSstandard datasets in @MATLAB and @GnuOctave - only downloading data files needed "on-demand", and cache the files for local analyses See our 3-part video tutorials - Part 1 and Part 2
#neuroimaging researchers, we want to show you a cool way to access complex @OpenNeuro @BIDSstandard datasets No need to download gigabytes of files before starting analysis You can use our https://t.co/hleSEc2inC REST-API and #JSONLab to get data on-demand @MATLAB & @GnuOctave
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Please fill out a brief google-form and tell us what you think about neuroimaging data sharing🧠💽🤝 https://t.co/eHdoAqNlmw your feedback is critical for guiding us in the further developing of https://t.co/f0R6nMhr3r - a free data portal and search engine.
docs.google.com
The author of MCX and Iso2Mesh, Dr. Qianqian Fang, is inviting you to share your experience and comments on sharing research and scientific data. Dr. Fang is currently leading a new US NIH-funded...
I'd like to invite folks doing research in #neuroimaging,#fnirs,#biophotonics and #datascience to participate our first @NeuroJSON community survey https://t.co/anTJfXSUJ8
@oostenvr @fNIRS_org @BIDSstandard @GuiomarNiso
@furranko @yarikoptic @ReproNim @NeuroFedora @andreashorn_
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make @BIDSstandard dataset_description.json, guide by real-time validation using JSON schema
check this out we made a @BIDSstandard dataset_description.json creator⚙️,editor✏️ and validator✅ https://t.co/gYJ39td5IH we use @jsonschema to verify user inputs follow the recommended formats, making it easy for future data harmonization @NeuroJSON @OpenNeuroOrg @datalad
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https://t.co/f0R6nMhYSZ is a "document-store" for neuroimaging data. That means every data resource we host can be accessed universally using URL-based #REST APIs. check out how easy it is load datasets in #Python or @MATLAB
All datasets on https://t.co/hleSEc2Qda are stored in ubiquitously supported #JSON format and can be universally accessed in nearly all environments using URL based #RESTful-APIs here is a tutorial how to directly load datasets from https://t.co/hleSEc2Qda in #Python and @MATLAB
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Our imaging metadata extractor is especially optimized towards @BIDSstandard datasets, this helps users navigate across the comprehensive @OpenNeuroOrg datasets with ease.
Here is a video walk-through on how to dive into @OpenNeuroOrg datasets, and use the in-browser rendering tools to preview 3-D imaging volumes, mesh objects, and more if you want to take a look, head this way 👇 https://t.co/MGgnOSHxba
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We have developed automated metadata extraction, distillation and aggregation processes by taking advantage of modern #NoSQL database technologies. This enables flexible and fast search across vast numbers of neuroimaging datasets. Our @CouchDB backend is highly scalable.
A key area that @NeuroJSON and https://t.co/pWiAmLDAfx is hoping to facilitate is the "findability" of free datasets. This is achieved thank to modern #NoSQL databases. Our metadata are hosted in an #opensource @CouchDB, offering many ways to extract and search #metadata
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One can directly render 3-D/4-D imaging data inside browser before downloading data from https://t.co/f0R6nMhYSZ checkout the below screencast
More on data preview functions in https://t.co/pWiAmLDAfx: you can preview 1-D/2-D single data, 3-D structural MRI and even 4-D fMRI time series in the https://t.co/hleSEc2inC web based interface We use @Threejs library for fast rendering. try this https://t.co/LBNZjsVIq8
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We have a new data sharing portal, check out the tutorial at https://t.co/NZA5FfriwR
neurojson.org
NeuroJSON - Scalable, searchable and verifiable neuroimaging data exchange platform
#neuroimaging and #neuroscience peeps, we are extremely excited to announce a new service to help you navigate across growing public neuroimaging datasets, especially @BIDSstandard datasets! https://t.co/1Y1fOlynzK you can search over 38000 subjects and 1000 datasets @NeuroJSON
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#NeuroJSON Project is alive! https://t.co/Zil8GFr8Q5 We are in a mission to simplify scientific/#neuroimaging data storage/exchange/reuse/integration by using #JSON as the interchange format,enabling automation,validation, db&more @FangQ @fieldtriptoolbx @BIDSstandard #OpenJData
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