Nature Methods
@naturemethods
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Nature Methods publishes cutting-edge methods, tools, analyses, resources, reviews, news and commentary, supporting life sciences research. Tweets by editors.
New York
Joined March 2011
The wait is over!! We are thrilled to announce that we have chosen Spatial Proteomics as 2024’s Method of the Year! 🥳. For more on Spatial Proteomics and a road map to this special issue, please see this month’s Editorial or read on in this thread.
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BEAST X advances Bayesian phylogenetic, phylogeographic and phylodynamic analysis by incorporating a broad range of complex models and leveraging advanced algorithms and techniques to boost statistical inference.
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Cascadia from the Noble lab is a mass spec-based de novo sequencing model that uses a transformer architecture to handle data-independent acquisition data to achieve improved performance across a range of instruments and experimental protocols.
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And for a nice overview, please find the associated N&V from Siewert Hugelier here!
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Very excited to share a point-cloud based approach for studying the organization of complex intracellular structures from Viana and colleagues.
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Genome-Wide (GW): an interactive browser for ultrafast chromosome-scale genomics data visualization.
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CryoDRGN-AI: a deep learning-based ab initio reconstruction method for dynamic biomolecular complexes from cryo-ET and cryo-EM data.
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Very happy to share the Comment on Bioimaging Brasil from Heitor Paula-Neto, Gustavo Menezes, and colleagues describing their efforts disseminating in vivo imaging across Brazil.
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For a quick summary, read the Research Briefing here!.
Introducing CondenSeq, an imaging-based high-throughput approach for characterizing protein condensates within the nuclear environment. @KalliKappel .
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Assessing error control is fundamental in mass spectrometry-based proteomics. Authors introduce a theoretical foundation for entrapment experiments along with a method for more accurate evaluation of FDR control.
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Introducing CondenSeq, an imaging-based high-throughput approach for characterizing protein condensates within the nuclear environment. @KalliKappel .
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Our June issue is live! . On the cover, mScarlet3-H, a new monomeric red fluorescent protein. Image by Zhifei Fu. Paper here:.
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We also actively encourage invited reviewers to involve early career researchers (especially postdocs and grad students) in co-reviewing papers. We hope this will broaden our reviewer pool as well as help train the next generation of scientists.
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Starting this month, we have implemented new processes in our submission system to ensure that early career researchers (or any other scientist assisting the invited reviewer) are recognized for their contributions in helping peer review papers - including code review.
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We are ecstatic to introduce a new project (together with @NatureAging) aimed at greater inclusivity in our peer review process! Read all about it here in our latest Editorial!.
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Editors across @NaturePortfolio have put together a Collection of highlights in #stemcell research from the past year. Check it out here!.
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Senior Editor Dr. Madhura Mukhopadhyay @madhuramukho will be at the ISSCR conference in Hong Kong this week. Please get in touch with her directly by email if you would like catch up at #ISSCR2025!.
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