MoBiDiC_BioInfo
@MoBiDiC_BioInfo
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Bioinformatics from Montpellier University Hospital. Author of "MobiDetails: online DNA variants interpretation" in EJHG. Read here: https://t.co/dSqiLxEaPA
Joined October 2020
MobiDetails: online DNA variants interpretation in @ejhg_journal just published. Read it at https://t.co/bq67Nawr7T and share! #mobidetails
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As some of you may have noticed, we migrated the #mobidetails timeline to mastodon, a decentralized open-source social network. News now at https://t.co/WUEk9LiHz8.
https://t.co/UjdwryZhzp
mastodon.online
33 Posts, 1 Following, 12 Followers ·
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yesterday was the day of a new MobiDetails release! Most of work behind the scene, but also a new direct link to MIZTLI, a rich structural analysis tool. The link from MD will evolve in the coming weeks to make your job even easier!
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Interested in DNA variant interpretation, HGVS nomenclatures, ACMG classification? Check out @VEPTCOURSE !! Barcelona, 2-4 October. Details at https://t.co/qMmF0B54j1. MobiDetails will be present with a 1,5h workshop days 2 and 3!!! #mobidetails #VEPTC2023
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New Mobidetails version released yesterday including pre-computed AbSplice predictions from @gagneurlab, some bug fixes and UI experience improvements. More at https://t.co/PhW7cn8cwC!
#mobidetails #bioinformatics #geneticmutations
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Retrouvez nous demain à 13h pour une présentation de David Baux qui nous parlera de l’apport du deepLearning en génétique moléculaire à travers 3 outils : AlphaFold, DeepVariant et SpliceAI. #APIhour #DeepLearning Lien Teams :
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Then if you are, please read https://t.co/BweZDLnVvs! It's already here! #mobidetails
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Need a nice database and visualisation tool for your VCF files? Check out our brand new software, SEAL, which annotates your VCFs using VEP from @ensembl, stores and displays them in a nice web app!! https://t.co/l6ULvx44z3
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Glad to announce the release of the SpliceAI-visual paper: https://t.co/ekGU6XI5QN a collaborative work based on an original idea of @JMdeSteAgathe - don't hesitate to share! Available now in #mobidetails
https://t.co/mHmf5983OM
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Check out the SpliceAI predictions for your favourite gene (MD canonical transcript), using SpliceAI-visual directly in the gene page (embedded in a igv.js browser) #mobidetails
https://t.co/UjdwryZhzp
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New mode called 'hg38 secured' for genes that encounter mapping issues on hg19 - this mode unlocked more than 40 genes and nearly 4,000 transcripts! Nothing to do! Users automatically switch to this mode when required. #mobidetails
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Some of you may have experienced an error linked to hg19 mapping issues with your variants: currently working on an hg38 only capable version of MD: stay tuned and as a bonus this should unlock some additional transcripts! #mobidetails
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Trick: click on a gene symbol to display and follow some useful, gene-centered, links. #mobidetails
https://t.co/UjdwryZhzp
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Trick: The MANE isoform provided by default does not suit your needs? Annotate a variant on your favourite isoform by selecting it in this pop-up menu: just click "Choose an isoform"! #mobidetails
https://t.co/UjdwryZPoX
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Here it is!! SpliceAi-visual is now available in MD for many transcripts! Analyse more accurately the splicing outcome of your variants, get spliceAI results for indels, search for pseudo-exon insertions predictions and so on... Enjoy!
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Working as much as possible on a new internal server intended to bring you asap the brilliant and powerful spliceaivisual from @JMdeSteAgathe right into #mobidetails
https://t.co/UjdwryHGaP
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New API endpoint in MD dealing with VCF strings (like 1-216422237-G-A) - Can be used in the search engine to generate new annotations! Have a look at the search engine manual https://t.co/zFYAOWFUWx or at the swagger https://t.co/f4egMFQCxB
#mobidetails
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guess what? #mobidetails poster award winner at #AssisesGenetique2022 @metropoleRennes ! Many thanks to @bioinfodiag !! 🍻
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MobiDetails new version is online since yesterday morning - so far so good a few minor bugs that have been patched today. #mobidetails
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Mobidetails major upgrade due to 2022/02/14 (next monday morning). So excited to finally release it! Service interruption planned #mobidetails
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