Loïs Maignien loimai.bsky.social
@LoiMai
Followers
595
Following
1K
Media
70
Statuses
825
Loïs Maignien - Microbial EcoGenomics, Lab. Microbio of Extreme Environments Associate Prof. @IUEM_Brest France, Adjunct scientist @MBLScience USA
Brest
Joined November 2011
#EBAME 9 Microbial Ecogenomics Workshop! Brest🇫🇷, Oct 12-26, 2024. A two-week workshop of lectures & tutorials to learn about omics data analysis for microbial ecology and evolution, all in the beautiful Brest Bay! Apply here until July 1: https://t.co/jhv2sCjFd6
0
35
71
It has also started spreading messages so violent, racist, sexist and frankly so stupid that it has been clear for a while that it's no longer useful. When is a good time to leave? Now I guess.
0
0
0
This network was a great place to follow friends' work, discover new labs and remain informed about the world.
1
0
1
Ever wondered if those butane-oxidizing archaea ( https://t.co/XuPcXeyALV) could run their metabolism in reverse? Carbon dioxide to butane? Well, wonder no more: check out our new paper, now live at Nature Communications https://t.co/YtT4XOwKJx
nature.com
Nature Communications - In this study, the authors use metabolic modelling and isotope labelling to show that archaea can reverse the anaerobic breakdown of butane, turning CO2 back into the gas,...
0
10
30
Contribution of ammonia oxidizers to inorganic carbon fixation in the dark ocean https://t.co/DjRGH5sQNp
#biorxiv_micrbio
0
6
7
Foldseek https://t.co/86NkP8Vgcj Clustering the AlphaFold DB https://t.co/W4L1w6xsFc Structure is up to 10X more conserved than seqs https://t.co/lHRyQo7LZJ Foldseek pipe https://t.co/LeWzzb2Eil Twilight zone https://t.co/HPXzmWjNbf VQ-VAE (IA) https://t.co/S4Lmcu1FNQ
github.com
A NumPy port of the foldseek code for encoding protein structures to 3di. - althonos/mini3di
1
6
35
The Quince Group at the Earlham Institute and @TheQuadram are supporting the #EBAME Workshop on Computational #Microbial #Ecogenomics in France next week. The annual course looks at the latest applications of sequencing and computational approaches for microbial ecology.
1
2
8
Chemolithoautotrophic bacteria flourish at dark water-ice interfaces of an emerged Arctic cold seep
academic.oup.com
Abstract. Below their ice shells, icy moons may offer a source of chemical energy that could support microbial life in the absence of light. In the Arctic,
0
5
22
Meet @DimitraIoli, microbial ecologist in #REWRITE! 🌿 She's advancing our understanding of microbial diversity & its role in coastal ecosystems. 🌍 Dive into her work on rewilding Europe’s mudflats in our latest blog. 👇 https://t.co/3dbtyWTeCh
0
1
1
Preprint on "BWT construction and search at the terabase scale". We can compress 100 human genomes to 11GB in 21 hours, find SMEMs with it, do affine-gap alignment and retrieve similar local haplotypes. 7.3Tb commonly sequenced bacterial genomes ⇒ 30GB https://t.co/DiRwZNHVVa
9
222
726
If you've asked me about bacterial phylogenetics, you've heard me complain about the current standard... concatenation. We've been working on approaches to do better, and now have a first preprint on the topic! https://t.co/RfAbcsRq7k Joint work w María Valdez 🤩 1/ 🧵
arxiv.org
Phylogenetic trees summarize evolutionary relationships between organisms, and tools to analyze collections of phylogenetic trees enable contrasts between different genes' ancestry. The BHV metric...
1
20
79
Wow, @nature has retracted the 2020 Poore et al. cancer microbiome paper that we showed ( https://t.co/hBvfGCvyGR) was deeply flawed. The retraction date is tomorrow so I can't yet read the official notice, but I'll update when I can @RetractionWatch @ProfBootyPhD
43
393
2K
Don't miss the 9th EBAME Workshop on Computational Microbial Ecogenomics 📌Brest, France 🗓️12-26 October 2024 ⏳Apply by 01 July 2024, to advance your skills in genome-resolved metagenomics and more! 🌊🧬 🔗 https://t.co/DtEv79uns2
@IUEM_Brest #EBAME #EBAME9 #DataAnalysis
0
3
4
You have an interest for microbial physiology and molecular ecology ? Check the adv for our junior postdoc position and we are looking forward to read your application to work on truncated denitrifiers and the production of N2O in marine sediments.
1
24
29
Editorial now out on building microbial literacy through a child-centric curriculum. It's been an honour to contribute to this initiative under Ken Timmis' visionary lead. Microbes can change the world for the better, but not enough people know about them.
enviromicro-journals.onlinelibrary.wiley.com
Microbes are all pervasive in their distribution and influence on the functioning and wellbeing of humans, life in general and the planet. Understanding their activities is vital for decisions and...
0
22
70
🔬 Romain Koszul dirige le projet COMET sur les génomes microbiens, financé par @sup_recherche et soutenu par @AgenceRecherche, @SGPI_avenir. 🎯Objectif : explorer les génomes de bactéries et d'archées pour mieux comprendre leur évolution. #France2030
3
7
32
[URGENT] L'équipe ECOMAP de la @SBRoscoff recherche un(e) candidat(e) pour une thèse en Ecologie Microbienne Marine qui combine bioanalyse/biostatistique et analyses expérimentales au labo. https://t.co/daJRs2veHy contact : laurence.garczarek@sb-roscoff.fr @L_Garczarek
0
9
7