marek mutwil 🇺🇦
@LabMutwil
Followers
2K
Following
2K
Media
292
Statuses
1K
Aim: improve gene function predictions of the plant kingdom to produce more climate change-resilient and nutritious crops.
Denmark
Joined October 2014
Super cool to see our petiole cross sections from our fern story make it to the cover of @NaturePlants . Cudos to our collaborator Richard Sibout and his team.
2
7
62
Check out Jan Hübbers's In Brief article describing our PlantConnectome (Plant Cell, in press)
0
0
1
Our Plant Chatbot ( has been updated with a new interface. To make the results more accurate, we now include a large language model guardrail that highlights relevant results obtained from the knowledge graph. Give it a spin!
0
2
5
Very discouraging. Conclusion: keep doing what you have been doing?.
Reading in journal club:. Shifting research focus comes with the risk of reduced impact .
2
0
0
The knowledge graph viewer now color-codes the entity and relationship types. For example, nodes representing gene IDs are orange, while activation relationships are represented by green edges.
0
0
0
2) A table summarizing the found relationships (e.g., MYB46 regulates CESA1), the experimental evidence (e.g., yeast-one-hybrid) and Pubmed IDs where the relationship was mentioned. It's still a prototype. Let us know what you think!. 3/3.
1
0
2
It can answer questions:. 🧬 “Which genes are regulated by MYB46?” 2/3. 🧪 “What boosts heat tolerance?”.You will get:. 1) The knowledge graph answering your question.
1
0
0
🌿 Meet PlantChatbot — your AI companion (ChatGPT-like tool) for plant biology!. Built on a knowledge graph from 200,000+ papers and powered by LLMs. Try it now: 🌱 #PlantScience #AI #KnowledgeGraph #Chatbot 1/3.
3
27
87
@NaturePlants Our lab has a publication mug policy. If you publish as a first author in one of the better journals, you get a mug. The latest recipient is Zahin for the Fern paper.
0
0
2
RT @NaturePlants: The May 2025 issue is now fully online, with a cover highlighting the cell wall of ferns, from:. "Comparative transcripto….
0
14
0
Good thing I love my job 😅.
NEWS: 🇩🇰 Today, the retirement age in Denmark has been raised to 70 for people born after the end of 1970.
0
0
4
RT @StressGranuleMC: Suprising results!!! Plants lacking RBP47, the well known Stress Granule marker are more resistant to high temperature….
0
19
0
Please leave us comments on what could be improved, or which features could be implemented, preferably on the Discord channel on the homepage.
0
0
3
We share the data as downloadable csv files for those of you who are bioinformaticians.
1
0
0
Importantly, when we compare our networks to gene regulatory networks (AGRIS), protein-protein interaction networks (BIOGRID) and text mining networks (STRING), we achieve superb accuracy and coverage. Our database seamlessly integrates all types of information.
1
0
1
Our AI summary tool allows you to 'talk' to the network. For example, you can get a chatGPT-like summary of the network that you are looking at:
1
0
0
. edge validation tool. This allows you to check which sentences in a paper gave the basis for this edge. Also, the edge basis information tells you which *experiments* were done to support the edge.
1
0
0
Thus, our Connectome allows you to investigate relationship between ~5 million entities comprising of many types. Some additional (we think cool) features are:
1
0
0
How about metabolites and treatments that can improve heat tolerance? Search for 'heat tolerance', select 'improved heat tolerance' and 'enhanced heat tolerance'.
1
0
0