Junil Kim
@JunilKim_caleb
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Computational Biologist focusing on single cell transcriptomics in space-time continuum School of Systems Biomedical Science, Soongsil University
Seoul
Joined October 2012
Patrick’s Vesalius 2.0 enables an interpretable cell-cell mapping in spatial context. Congratulations!! .
nature.com
Nature Communications - The alignment of heterogeneous spatial samples has become a growing challenge. Here, authors present a multi-scale, multi-context, and interpretable mapping strategy to map...
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RT @KJWonKJ: Applying a foundation model for gene and cell to reconstruct gene regulatory networks (GRN). Great performance and transferabi….
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FastTENET: an accelerated TENET algorithm based on manycore computing in Python
academic.oup.com
AbstractSummary. TENET reconstructs gene regulatory networks from single-cell RNA sequencing (scRNAseq) data using the transfer entropy (TE), and works suc
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Application of computational algorithms for single-cell RNA-seq and ATAC-seq in neurodegenerative diseases
academic.oup.com
Abstract. Recent advancements in single-cell technologies, including single-cell RNA sequencing (scRNA-seq) and Assay for Transposase-Accessible Chromatin
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Inflammatory transcriptomic signatures and cell type compositions in i. Deconvolution of RNAseq of UC into cell type transcriptional signatures.
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RT @allthatcoffee: I'm excited to share our recent preprint, which investigates scRNA-seq and spatial transcriptomic analysis in Parkinson’….
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I am happy to share our preprint of a Parkinson’s disease study using snRNAsrq and Visium. We found PD-related transcriptomic and regional changes of astrocytes and microglia.
biorxiv.org
The heterogeneity of Parkinson’s disease (PD) is increasingly recognized as an important aspect of understanding the disorder. Among the factors contributing to this heterogeneity, ethnic differences...
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Current computational methods for spatial transcriptomics in cancer bi.
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Inference of Causal Interaction Networks of Gut Microbiota Using Transfer Entropy
biorxiv.org
Understanding the complex dynamics of gut microbiota interactions is essential for unraveling their influence on human health. In this study, we employed transfer entropy analysis to construct a...
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A review on single cell multiomics technologies.
nature.com
Experimental & Molecular Medicine - Each cell is a bustling city of genetic material and proteins, but traditional methods often blur the individuality of each cell by averaging the data....
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한국생명정보학회에서 BIML2024 생물정보학 머신러닝 워크샵을 개최합니다. 작년의 인기에 힘입어 이번에는 5일간의 오프라인 강의를 준비했고 새로운 강의도 개설됩니다. 온라인에도 기존의 강의와 함께 새로운 강의들이 개설됩니다.
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RT @RongFan8: Happy New Year!! Single-Cell Genomics 2024 Gordon Research Conference to be held in the breathtaking Swiss Alps! 🤩🤩🤩 We plan….
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Tm4sf19 deficiency inhibits osteoclast multinucleation and prevents bone loss - Metabolism - Clinical and Experimental
metabolismjournal.com
Multinucleation is a hallmark of osteoclast formation and has a unique ability to resorb bone matrix. During osteoclast differentiation, the cytoskeleton reorganization results in the generation of...
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A review on gene regulatory network reconstruction algorithms based on single cell RNA sequencing. Genes Genom (2023).
link.springer.com
Genes & Genomics - Understanding gene regulatory networks (GRNs) is essential for unraveling the molecular mechanisms governing cellular behavior. With the advent of high-throughput...
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RT @HyobinKim4: CellNeighborEX is on the cover of @MolSystBiol!. We identified transcriptomic changes caused by direct cell contact using s….
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CellNeighborEX: deciphering neighbor‐dependent gene expression from spatial transcriptomics data | Molecular Systems Biology
embopress.org
image image CellNeighborEX is a computational tool for exploring transcriptomic changes caused by direct cell contact in spatial transcriptomics data. CellNeighborEX provides a new perspective on...
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Collaborating with cancer biologists on a transcriptomics study.
nature.com
Cell Death & Disease - N-linked glycosylation is essential for anti-tumor activities of KIAA1324 in gastric cancer
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