@Deutschbauer_Lab
@DeutschbauerLab
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Microbial functional genomics @BerkeleyLab
Berkeley, CA
Joined October 2018
It’s actually happening, starting my own lab at @UBuffalo in Microbiology and Immunology!! 🎉🎉 Excited about deciphering the molecular functions of gut anaerobes, phages, and their interactions? Please reach out! https://t.co/mzFaIYGz8z
medicine.buffalo.edu
The Department of Microbiology and Immunology has two new faculty members starting later this year who are eager to recruit new members to their research labs.
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Another VERY exciting opportunity to join us @ArcadiaScience!!! We are looking for Scientists-in-Residence to come do science with us at our brand new HQ in Berkeley, CA for up to a year! https://t.co/2n8KZXqTFS
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Super excited to share a big part of my postdoc work in the @AdamArkinLab where I developed a new functional genomic platform to study gene functions in gut bacteria! See thread for a brief summary. 1/n #functionalgenomics #microbiome #DNAbarcoding
https://t.co/tMKlN5cHQU
biorxiv.org
A mechanistic understanding of host-microbe interactions in the gut microbiome is hindered by poorly annotated bacterial genomes. While functional genomics can generate large gene-to-phenotype...
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Happy to be presenting my work at #ISME18 today! Poster 468 on using DNA barcoding and expression libraries to study gene functions using phenotypic screens. It's difficult to infer function from sequencing data. We recovered expected genes and novel surprising ones!
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Price et al present GapMind: an automated tool to annotate the uptake and catabolism of 62 compounds in #bacteria and #archaea genomes The GapMind web server takes 30 seconds for a typical #genome
@LBNLBioSci @AdamArkinLab @DeutschbauerLab @PMB_Berkeley
https://t.co/d0HoSOqhkg
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Very happy to share a big part of my PhD work @LIPME_Toulouse!!😁🎉 We performed a genome-wide screening to identify fitness determinants in the Xanthomonas campestris bacterial pathogen during early stages of plant infection w/ RB-TnSeq https://t.co/Vep4H1Wycv ⏬Summary 🧵!⏬
biorxiv.org
Plant diseases are an important threat to food production. While major pathogenicity determinants required for disease have been extensively studied, less is known on how pathogens thrive during host...
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Audrey Li-Wen Wang, an ENIGMA research associate in the @DeutschbauerLab is studying the genes that are important for the survival of these bacteria in contaminated aquifers Join us! https://t.co/5lPfE2jhKN
#BioEPIC
@BerkeleyLab @eesalbnl
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Join our team! We are looking for a postdoc interested in developing new genetic tools for non-model bacteria 🧬🦠🧫 @LBNLBioSci @BerkeleyLab , more details there: https://t.co/gnkschGhDh
jobs.lbl.gov
Lawrence Berkeley National Lab’s (LBNL) Environmental Genomics & Systems Biology Division has an opening for a Postdoctoral Associate to...
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We're excited to share one of our newest papers, where we took a look at biofilms and interactions between bacterial strains. Read the full article from Frontiers in Microbiology: https://t.co/N4JP1wBhrs
#biofilms #microbiology #metabolomics
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Interested in exploring gene function in many many bacteria? 🧬🦠🧬 We have an opening for a Research Associate position in our lab
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3 parts of the same order in 3 large boxes -> Next generation Sequencing needs Next Generation packaging @illumina
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Presenting tonight #WorldMicrobeForum @FEMSmicro @ASMicrobiology how « Large scale genetics in Anaerobes lead to enzymes discovery » #RBTnSeq @DeutschbauerLab
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🌱🦠👩🔬 join us tomorrow in #WorldMicrobeForum @ASMicrobiology @FEMSmicro to know more on our work about "Unravelling Bacterial Plant Colonization at the Genome Scale: Insights Into the Rhizosphere" @DeutschbauerLab #TnSeq #RBTnSeq
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Our newest @jbei study out in Metabolic Eng led by @engt_phd @DDBaner We combined functional genomics and systems bio for bioreactor-ready strains. & we improved production of #indigoidine from aromatics! Great collab with @DeutschbauerLab @abpdu @jgi
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A tale of tailocins, bacterial stabbing tools https://t.co/NljIzRd7b5
#behindthepaper @carimfraiche @AdamArkinLab @DeutschbauerLab #ENIGMA_SFA
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A great experience working on this project, and big thanks to our wonderful collaborators. @DeutschbauerLab @AdamArkinLab, @PTurnbaugh lab, Christopher J Petzold lab @JBEI,and Kerwyn Casey Huang lab @Stanford.
cell.com
Liu et al. report large-scale, genome-wide fitness assays for the model human gut commensal Bacteroides thetaiotaomicron, both in vitro and in vivo. These data provide insights into the bacterium’s...
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Our latest study in developing P.putida for conversion of aromatics & genes targets for better bioreactor strains Congrats to @DDBaner @engt_phd for leading the @jbei work and collaborators @abpdu @DeutschbauerLab
biorxiv.org
Pseudomonas putida KT2440 is an emerging industrial microbe amenable for use with renewable carbon streams including aromatics such as para -coumarate ( p CA). We examined this microbe under common...
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Thrilled to share our exploration of Desulfovibrio vulgaris Hildenborough physiology using RB-TnSeq @DeutschbauerLab #Enigma_sfa @LBNLBioSci
biorxiv.org
Sulfate-reducing bacteria (SRB) are obligate anaerobes that can couple their growth to the reduction of sulfate. Despite the importance of SRB to global nutrient cycles and their damage to the...
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🧫 New approach catalogues nature's hidden arsenal: the #viruses that infect bacteria. https://t.co/9j415TZjsK
@LBNLBiosci @vivek_mutalik @ben_a_adler @denish_piya @rishihs @DeutschbauerLab @AdamArkinLab @bkoskella
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