David R. Maddison
@DavidRMaddison
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Joined December 2011
We have released version 3.8 of Mesquite, a modular system for evolutionary analysis, now bundled with Zephyr (to run RAxML, IQ-Tree, etc.), Chromaseq, and Cartographer! The basic packages also have a few new features and bug fixes. @DavidRMaddison
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At a thrift store I bought some random photos of random people, and snuck one of the photos onto a friend's fridge (yellow arrow) when I visited him. In 2019. It's driving me crazy that he hasn't said anything. What should I do?
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The Tree of Life Web Project may be nearing the end of its life. The server that it is on will be retired on 31 December, and it is not clear yet whether we have the resources to move it successfully to a new one. #TreeOfLife
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Congratulations, @JoeBiden and @KamalaHarris. Our two countries are close friends, partners, and allies. We share a relationship that’s unique on the world stage. I’m really looking forward to working together and building on that with you both.
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Dating during COVID-19: Pam and I haven't seen each other in quite a few weeks, so we decided to recreate our first date over Zoom. We asked the owners of Sybaris to take pictures from the table, and we used those as Zoom backgrounds. https://t.co/DxGSxWPQwB
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Chromaseq 1.52 for Mesquite has been released; it is now compatible with MacOS X 10.15 (Catalina). #mesquiteproject #chromaseq
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Ten years after its discovery, the waterfall beetle Lionepha tuulukwa officially has a name. https://t.co/pdedmvgMSv
#carabid
academic.oup.com
Abstract. The western North American genus Lionepha is shown to contain at least 11 species through a combination of eight-gene species delimitation analys
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Check out our preprint on leveraging signal from #repetitive #DNA in species-level studies. Repeat signatures are stable within, and variable among, closely related #ground #beetle species. I’m proud of this last chapter of my PhD work with @DavidRMaddison
https://t.co/xMsHYAYnmo
biorxiv.org
Genome architecture is a complex, multidimensional property of an organism defined by the content and spatial organization of the genome’s component parts. Comparative study of entire genome archit...
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The early-access version is available of our paper showing that the amazingly weird bembidiine beetles on the island of St Helena are one endemic clade with an African ancestry. @John_S_Sproul #StHelena #Carabidae
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We've released Zephyr 3.1 ( https://t.co/PzSfSWgsKC) for Mesquite, with numerous bug fixes as well as support for IQ-TREE runs on CIPRes. @WayneMaddison
#mesquiteproject #iqtree #CIPRES
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The Tree of Life Web Project: 25 years online https://t.co/oLw9j3zZOA
#TreeofLife
subulatepalpomere.com
On 16 November 1994, we first made public the prototype version of the Tree of Life Web Project. At that time, it was a series of static web pages, with trees made out of text characters, created b…
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We've released Mesquite 3.6 ( https://t.co/Li91CvUxnr ). It supports Zephyr 3 ( https://t.co/PzSfSWgsKC) with support for SSH-based analyses on remote servers) and Chromaseq 1.5 ( https://t.co/nJAa1TIx3C) with easier GenBank submissions). @WayneMaddison #mesquiteproject
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We've released Zephyr 2.11 ( https://t.co/PzSfSWgsKC) containing some important bug fixes for RAxML CIPRes use, IQ-TREE, and GARLI. #mesquiteproject @WayneMaddison
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We've released Mesquite 3.51 ( https://t.co/Li91CvUxnr), containing fixes for some bugs, including one that caused problems in interpretations of bootstrap and similar values attached to nodes in some tree files. @WayneMaddison #mesquiteproject
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A lot of you are using outdated versions of Mesquite, including version 3.04, which is more than 2 years old. Spread the word: please update! The newly released version is 3.5. #mesquiteproject
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We've released Mesquite version 3.5. Bug fixes and workarounds, an offline manual and a new location for the website: https://t.co/o9QKB77vJA.
#mesquiteproject @DavidRMaddison
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Zephyr 2.1 (a Mesquite package for interacting with phylogenetic inference program) was released today, providing IQ-TREE support. https://t.co/PzSfSWgsKC
#mesquiteproject #iqtree
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We’ve established a Facebook group for discussing Mesquite phylogenetic software. Come join! https://t.co/oRJ1sVJuNs
@DavidRMaddison #MesquiteProject
facebook.com
Welcome to the group page for Mesquite, the modular tool for phylogenetic workflows and analyses. Please post questions, suggestions and news about...
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Mesquite 3.4 released, with bug fixes, a few enhancements, and compatibility with Java version 9. https://t.co/CrJAgkiPhA Thanks to Daisie Huang for assistance with Java 9 compatibility. @DavidRMaddison @daisieclickie #MesquiteProject
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Today we have, at long last, released MacClade's source code. https://t.co/hwNHv6Ixlt
#MacClade @WayneMaddison
github.com
MacClade 4: Analysis of phylogeny and character evolution - MesquiteProject/MacClade
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