
Common Fund Data Ecosystem
@CfdeNih
Followers
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Working to improve findability, accessibility, and interoperability of NIH Common Fund data sets and to encourage data reuse
Joined October 2019
RT @SahaSurya: Video by the @adamcresnick team demonstrating an application describing cross-DCC analysis with GTEx data.#CFDE #GA4GH.http….
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RT @SahaSurya: A practical manifest based solution for file transfer using the #GA4GH #DRS standard presented at the recent Plenary meeting….
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If you are interested in using LINCS datasets and tools, this is an excellent resource from @AviMaayan and colleagues
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.@NIH_CommonFund’s Request for Information invites you to share what you think is the greatest opportunity in #biomedical and behavioral research today and why they should pursue it as a program.
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This morning @raynamharris led a session of R for RNASeq Analysis with @GTExPortal data. Currently we're in a session on exploring data from @sparc_science! See website for info & recordings: Register & zoom link here:
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Join us today at 9 am PT! @ctitusbrown will lead a session on exploring and analyzing data from the Human Microbiome Project (@hmpdacc) with #sourmash using Amazon Web Services. Register at
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This morning's CFDE Hackathon session introduced the @CfdeNih, @hmpdacc, @kidsfirstDRC, @sparc_science & @GTExPortal. In the afternoon, @jessicalumian demoed the CFDE Search Portal. Recordings are available at: Register to attend:
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The CFDE Hackathon starts Monday, May 9! Sessions will feature the @CfdeNih Search Portal and provide opportunities to explore data from @hmpdacc, @kidsfirstDRC, @sparc_science, and @GTExPortal! More info at: Register here:
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@NIH_CommonFund The CFDE Portal now features a variety of data types from 11 groups: @4dn_dcic, @exRNA, @kidsfirstDRC, @GTExPortal, @glyco_pm, @_hubmap, @hmpdacc, @druggablegenome, @LINCSProgram, @sparc_science, @MetabolomicsWB. View the portal at: @NIH_CommonFund
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We're excited to announce a feature and data update to the CFDE Portal! Users can now create personal collections, export data, and search for diseases, genes, proteins, compounds, substances, and time series data! @NIH_CommonFund
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The CFDE Hackathon session "Intro to R for RNA-Seq Analysis" on 5/11 will teach participants how to import, wrangle, harmonize & visualize RNA-seq data in RStudio, featuring data from the @GTExPortal. More details at: Register here:
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The @sparc_science portal maps connections between nerve and organ systems for discovery and development. The CFDE Hackathon features a session on accessing these resources with the SPARC API on May 11! More info at Register here:
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The Common Fund Data Ecosystem is hosting a Virtual Hackathon from May 9-13th! This event will have sessions from @kidsfirstDRC, @sparc_science and @CfdeNih. See our website for more information: Register here:
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In this workshop, attendees will learn common R tools for wrangling, harmonizing & visualizing RNA-Seq data. Taught by @raynamharris with data from the Gene Expression Tissue Project (GTEx). For more info and to register, visit #WednesdayWorkshops
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RT @kidsfirstDRC: If you're attending #AACR2022, we hope you visit @KidsFirstDRC at exhibitor booth No.3534! Attendees can get live Data Re….
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RT @sparc_science: Visit #sparcAtExpBio Tools & Tech Showcase (booth #1141) and SPARC Portal (booth #1140) from today until Tuesday to play….
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