RootPainter: Deep Learning Segmentation of Biological Images with Corrective Annotation. Now in @NewPhyt

<-- Link to the paper.

Accurate, user-friendly, and free AI stomata quantification with #RootPainter using corrective annotation. Works across species & imaging setups. See our new paper "#Stomata morphology measurement with interactive machine learning: accuracy, speed, and biological relevance".

Five seasons with DeepRootLab: A unique facility for easier deep root research in the field -- I really enjoyed this collaboration with @EusunHan et al - more work coming soon.

The instructions are available here:

New instructions for installing the RootPainter trainer (server) on windows 11 have been added to the GitHub repository.

RT @LarryMattYork: There's a science party on Bluesky. Join us.

RT @LDeClippele: 🎓🐟 PhD Opportunity! 🐟🎓.Explore how coastal habitats support fisheries using #bioacoustics & #MachineLearning!.🌊 Study mari….

New paper 📊🌱: 'Automated seminal root angle measurement with corrective annotation' Excited to share our new free #OpenSource tool for root scientists! With Marta Malinowska, Torben Asp, & team @QGG_AU #AI #OpenScience #ROOTS.

RT @M_ecohydro: 📢New Root paper: Accesible AI model for ecologists fails to catch roots in complex mature forest soil images from minirhi….

RT @richardnair: 📢📢full funded (EU-UK) PhD project with me @TCD_NatSci doing cutting edge stuff with automated root measurements to underst….

PhD position in Data-driven plant phenotyping for discovering novel perennial traits with @EusunHan

RT @LDeClippele: How do you boost AI model training efficiency? A team of Benthic Ecologists and Machine Learning Scientists dived into thi….

RT @H_Poppy_Clark: 🚨New paper alert!🚨 Our work demonstrating the suitability of RootPainter, an interactive machine learning tool, to marin….

RT @H_Poppy_Clark: Be sure to check out the paper and our handy handbook ( to see just how accessible RootPainter i….

RT @richardnair: if you're looking for a PhD and are interested in #roots, #belowground dynamics, and links between plant physiology, soils….

RT @LDeClippele: Final days to apply to the Ecological Data Science Leverhulme DTP which offers an exciting array of data science and machi….

RT @LDeClippele: 📢PhD opportunities in Ecological Data Science as part of *Leverhulme DTP* . On offer: fully funded deep-learning PhD proje….

RT @EusunHan: An exciting PhD opportunity at the Department of Agroecology - Aarhus University on N2O emission and crop residue!.@DptAgro….

RT @LarryMattYork: I am hiring a postdoctoral researcher with my colleague Dr. Chen at ORNL to work on shoot and root responses to fungal a….

Toward improved image‐based root phenotyping: Handling temporal and cross‐site domain shifts in crop root segmentation models - Banet - 2024 - The Plant Phenome Journal - I really enjoyed this collaboration and am happy to see this published.