Poppy Clark
@H_Poppy_Clark
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Deep Sea Researcher • Sponge Chemical Ecology • @EastbioDTP PhD Student @aberdeenuni • Part of @MBC_UoA
Joined December 2021
🚨New paper alert!🚨 Our work demonstrating the suitability of RootPainter, an interactive machine learning tool, to marine image analysis is now out in @royalsociety Open Science (1/3):
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RT @MBC_UoA: 📣📣.Join our amazing team at the Marine Biodiscovery Centre in Aberdeen! 🪸👩🏼🔬🧫🧬. We’re looking for a new Mass Spec Technician.….
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RT @MBC_UoA: Prof Jaspars and co-authors have just published a comprehensive review on marine natural product pharmaceuticals! Be sure to c….
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RT @MBC_UoA: The wait is over! . We’re looking forward to hosting you at our 3-day workshop on Computational Mass Spectrometry, 19-21/06/20….
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RT @RSocPublishing: Recently published in #RSOS: New interactive #MachineLearning tool for #marine image analysis. Read the full paper: htt….
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RT @LDeClippele: How do you boost AI model training efficiency? A team of Benthic Ecologists and Machine Learning Scientists dived into thi….
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RT @LDeClippele: The @maf_world Training School participants diving into the future of marine image annotation with the #AI #Interactive s….
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RT @LDeClippele: Thrilled to see such an amazing & engaged group at our @maf_world Training School! 🪸🦀🐟📸🖥️📊. Excited for them to learn all….
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RT @DeepStewardship: 📣 Workshop on the latest methodologies in underwater image analysis! This workshop will cover: image acquisition at se….
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Be sure to check out the paper and our handy handbook ( to see just how accessible RootPainter is, even for users without machine learning experience.Huge thanks to my collaborators @Abe_404 @DanielMcKayFle1 Ann Larsson @MBC_UoA and @LDeClippele ! (3/3).
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Using the tool we developed highly accurate models (average dice score of 0.94 ± 0.06) to automatically detect and quantify the area of the deep-sea sponge Mycale lingua, in both Remotely Operated Vehicle video frames, and images captured from an underwater observatory (2/3).
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RT @LDeClippele: 📢PhD opportunities in Ecological Data Science as part of *Leverhulme DTP* . On offer: fully funded deep-learning PhD proje….
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RT @ChristineOceans: 📢 New #BBNJ paper!. What would a fit-for-purpose Scientific and Technical Body (STB) entail for the new BBNJ Agreement….
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RT @LDeClippele: *PhD position alert* .Use #acoustics and #AI to study #seagrass #restoration and their #EcosystemValue in Scotland!.🤿🎧🦐🐟🦀🫧….
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RT @LDeClippele: Proud to share this preprint by @H_Poppy_Clark on a new user-friendly AI tool for biodiversity analysis of underwater imag….
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Huge thanks to all collaborators involved! @Abe_404 @DanielMcKayFle1 Ann Larsson @MBC_UoA and @LDeClippele.
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No machine learning experience was required to utilise this tool. A detailed manual covering it’s installation and the training process (specifically for marine images) can be found here: . We hope you enjoy training your models as much as we did! 🎨🎨.
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Models developed with the tool performed well on both time-lapse imagery from an underwater observatory and ROV video frames! In-built corrective annotation metrics guided the decisions to stop training and aided the assessment of model success.
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Struggling with marine image analysis? Check out our recent work for a new solution! . We used the user-friendly and open-source machine learning tool, RootPainter, to quickly and accurately extract sponge surface area measurements from marine images 🌊📸.
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RT @MBC_UoA: After a great poster session yesterday we are ready for round 2! Head to p81 to hear about cyclic peptides from Joelle Mergola….
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