Big thanks to my amazing team for such a fun lab retreat: hiking, glacier trekking and brainstorming science ideas together. You are the best! Also super grateful to @ETH for the chance to work with such talented people in such a beautiful place. @AayushGrover8 @KraftAgnieszka

@GenomeBrowser Huge thanks to amazing collaborators: @val_boeva @ekrym2 @ilibarra @fabian_theis @VanAllenLab, @GenomeBrowser team, and everyone who contributed to UniversalEPI and the integration work 🙌

We just released Hi-C predictions for 157 ENCODE ATAC-seq cell lines and primary cells, made using our model UniversalEPI 🎉 From ATAC-seq to genome architecture, no Hi-C experiment required! Super excited to see these tracks now live on the @GenomeBrowser! Start exploring👇

Thank you HiTSeq for inviting me to talk to the wonderful #ISMBECCB2025 audience about our work! UniversalEPI for Hi-C predictions https://t.co/1NkVgYTbuS ASAP for ATAC-seq predictions https://t.co/fANivJfdAX Also, come to visit Aayush Grover’s poster on Thursday!

🚨 New preprint out! We studied deep learning models for high-resolution DNA accessibility prediction from DNA sequence! Key takeaway: ConvNeXt V2 blocks consistently boost accuracy. 📖 Preprint: https://t.co/fANivJfdAX 🔗Code: https://t.co/gPoEUxo7cM 📦 pip install atac-asap

Evaluation of deep learning approaches for high-resolution chromatin accessibility prediction from genomic sequence https://t.co/6EZkEJVykg #biorxiv_genomic

🚀 New preprint from our lab, @ekrym2 and @fabian_theis : UniversalEPI, an attention-based method to predict enhancer-promoter interactions from DNA sequence and ATAC-seq🌟 🔬 Key Highlights: - Predicts chromatin interactions across unseen cell types with no retraining. -

UniversalEPI: Harnessing Attention Mechanisms to Decode Chromatin Interactions in Rare and Unexplored Cell Types https://t.co/unXY9ij9mf #biorxiv_genomic

UniversalEPI: Harnessing Attention Mechanisms to Decode Chromatin Interactions in Rare and Unexplored Cell Types • UniversalEPI is a deep learning model that predicts chromatin interactions across unseen cell types using only DNA sequence and chromatin accessibility data,

Are you wrapping up your PhD in the coming month, or are you currently a postdoc? Looking to dive deeper into cutting-edge research in cancer genomics, AI, and computational biology? Our lab ( https://t.co/EYTP3eYiI8) is seeking passionate, ambitious researchers to join us through

Curious to know the minds steering #ASCS2023 towards success? 🌟 Say hello to our incredible Steering Committee 👋🏾 See you all on 25th November!🎉 #Meet_the_ASCS2023team #Bioinformatics #computationalbiology

📢 Call for Abstracts Now Open! 📝Share your research with the world at #ASCS2023 by October 10, 2023 (23:59 UTC+0) Submit your abstract here: https://t.co/f47ZIxCwLq @iscb_scs @iscb #Bioinformatics #ComputationalBiology #VirtualSymposium #CallForAbstract #ASCS2023

We introduce possibly the best way to **score your single cells** with a gene signature (in terms of speed, accuracy, and returned score ranges). Check our ANS method preprint: https://t.co/TsAQo14s0Z R and Python implementation: https://t.co/gZ8S6oZAsm #scRNAseq

We had a fantastic Organizing Team meeting and are excited about organizing the #ASCS2023 Symposium 🤩🧬🖥️🌏 Stay tuned, dear Students & Early Career Researchers in #Bioinformatics #ComputationalBiology! @iscb @iscbsc

I had the opportunity to meet in person this wonderful group of people with whom we have been working very actively to promote bioinformatics among students from different countries around the 🌎✨@pradeeperanti @GabosLab @AnaCastillo_51 @CuypersWim @AayushGrover8 #ISMBECCB2023

📣 Calling for enthusiastic volunteers in Asia! 🌏✨ After the success of #ASCS2022, we're thrilled to announce the #ASCS2023 Symposium in late November! 🚀🔬🎉 🎓Interested to be part of this amazing event's organization? 👉🏾Submit d form by Aug 14! https://t.co/ReifLVCH2j 1/2

@ISCB_RegSys We follow the 3D session at @ISCB_RegSys with Aayush Grover, talking about "UniversalEPI: An Attention-based Method to Predict Chromatin Interactions in Unseen and Rare Cell Types." #RegSys #ISMBECCB2023

You can now relive the moments of the 1st edition of @iscbsc Student Council Symposium in the Asian region. Check out the article on this unprecedented event published in @F1000Research: https://t.co/a5Kyy9XSQI Congratulations to the whole team! 🎉

Buckle up! #ASCS2022 chair (@AayushGrover8) is opening the closing ceremony and announcements of the Prize winners 🥳🤩 @iscb @iscbsc #Bioinformatics #ComputationalBiology

After great workshops, now it’s time to discuss the importance of preprints at #ASCS2022 “An introduction to Sciety and the value of #preprint evaluation and curation” by Shane Alsop and Mark Williams from @scietyHQ @iscb @iscbsc @AayushGrover8 @ArsalanQAZI11 @fbdincaslan