Yoshihiro Shibuya
@yhhshby
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Patience, informatics, c++
Ile-de-France, France
Joined March 2018
RT @giulio_pibiri: A monumental collaborative effort with many incredible people ☺️ Proud to be part of this!.
arxiv.org
Given a set $S$ of $n$ keys, a perfect hash function for $S$ maps the keys in $S$ to the first $m \geq n$ integers without collisions. It may return an arbitrary result for any key not in $S$ and...
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RT @BQPMalfoy: Now @giulio_pibiri present a novel way to build kmer-tailored MPHF that aim at both reduced cost and data locality ! #hitseq….
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RT @Sebasti66652811: Our paper "Matchtigs: minimum plaintext representation of k-mer sets" has finally been published 😊. .
genomebiology.biomedcentral.com
We propose a polynomial algorithm computing a minimum plain-text representation of k-mer sets, as well as an efficient near-minimum greedy heuristic. When compressing read sets of large model...
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RT @rrwick: Our (me, @JuddLmj and @DrKatHolt) new paper was recently published in @PLOSCompBiol:.I'm particularly f….
journals.plos.org
A perfect bacterial genome assembly is one where the assembled sequence is an exact match for the organism’s genome—each replicon sequence is complete and contains no errors. While this has been...
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RT @biorxiv_bioinfo: BioNumPy: Fast and easy analysis of biological data with Python #biorxiv_bioinfo.
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RT @giulio_pibiri: Job alert: At Ca' Foscari University of Venice, Italy, we offer a postdoc (12 months) on "Efficient queries in compresse….
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RT @tGaoTeng: I’ve learned about expectation-maximization (EM) algorithms many times in classes and in papers, but it has always been uncle….
teng-gao.github.io
From theory to implementation
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RT @jasonnfan: Here’s my first tweetorial :). My latest work introducing the Spectrum Preserving Tiling (SPT) is out! Collab w @scarecrow00….
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RT @giulio_pibiri: It was May and I was in Lille when @BQPMalfoy asked me how I would design a minimal perfect hash function (MPHF) specifi….
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RT @lh3lh3: Miniprot, a new mapper for aligning proteins to genomes with splicing and frameshift. Can be used for annotating new genomes. ~….
github.com
Align proteins to genomes with splicing and frameshift - lh3/miniprot
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RT @HannahThomasy: are there science camps for adults? like i just want to help someone dig up dinosaurs or count mushrooms or weigh turtle….
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RT @giulio_pibiri: I am sorry to hear my presentation at #HiTSeq2022 #ISMB2022 was cut off due to some technical issues. All I got was an….
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RT @TessaRDavis: The most powerful email app:. Gmail. But most of us aren't using it to its full potential. Here are 7 tips that’ll save y….
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RT @giulio_pibiri: I'm going to present SSHash at the upcoming #ISMB2022 conference (remotely). The paper is out in #Bioinformatics here:.h….
academic.oup.com
AbstractMotivation. A dictionary of k-mers is a data structure that stores a set of n distinct k-mers and supports membership queries. This data structure
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RT @biorxiv_bioinfo: fimpera: drastic improvement of Approximate Membership Query data-structures with counts #bio….
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