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WEBKNOSSOS

@webknossos

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Visualize, share, segment, and annotate your large 3D images online. #opensource #volumeEM #bioimageanalysis #connectomics #zarr Bluesky: @webknossos.org

Joined December 2018
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@webknossos
WEBKNOSSOS
1 year
Experience fast 3D microscopy data exploration with WEBKNOSSOS. Annotate your data with AI, explore 3D meshes, collaborate in real-time, manage datasets, and more. Share your research with just one click. Sign up for free at https://t.co/0wSoQOZ6QT!
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@webknossos
WEBKNOSSOS
6 days
🌟Enhancements🌟 Use Ctrl + Shift + Left, Ctrl + Shift + Right, Ctrl + Shift + Up and Ctrl + Shift + Down to rotate in 90 degree increments Learn more about keyboard shortcuts: https://t.co/kbJwv8uMTE
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@webknossos
WEBKNOSSOS
8 days
Tuesday tips 🐾 for Beginners Did you know about the 3D viewport settings? You can choose whether to display the planes, only show their wireframes, or display them along with the data. You also have the option to show the dataset border and the layer borders Check out the
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@webknossos
WEBKNOSSOS
27 days
🌟Enhancements🌟 ICYMI: Webknossos viewports are now rotatable. Use keyboard shortcuts to rotate the orthogonal viewport. Try Shift + Left, Shift + Right, Shift + Up and Shift + Down. Learn more about keyboard shortcuts: https://t.co/kbJwv8uMTE
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@webknossos
WEBKNOSSOS
29 days
Tuesday tips 🐾 for Beginners Did you know you can use the shortcuts K and L to toggle the sidebars in WEBKNOSSOS? You can also use '.' to maximize a viewport. Check out the Youtube Playlist for more tips: https://t.co/QUwL4fgbSr
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@webknossos
WEBKNOSSOS
1 month
🌟Big new feature🌟 Rotate the viewports. You can now freely rotate the orthogonal viewports. Trace your objects in the best angle.
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@webknossos
WEBKNOSSOS
1 month
Tuesday tips 🐾 for Beginners Did you know that you can toggle crosshairs and scalebars on or off in WEBKNOSSOS? Simply go to the settings in the left sidebar and customize your view. Check out the Youtube Playlist for more tips: https://t.co/VGMRh6mVOx
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@webknossos
WEBKNOSSOS
2 months
🌟Enhancement🌟 If you copy the position to your clipboard (e.g. from Webknossos, an email from a colleague or your notes), you can now paste the position anywhere in the Webknossos UI. No need to activate the position control.
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@webknossos
WEBKNOSSOS
2 months
Tuesday tips 🐾 for Beginners Did you know you can create bounding boxes? They help define regions of interest, export specific data, and more! Check out the Youtube Playlist for more tips: https://t.co/QUwL4fgbSr
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@webknossos
WEBKNOSSOS
2 months
🌟Enhancement🌟 Make the 3D meshes of your segments translucent. Great for revealing inner segments, such as as cell organelles. Also, translucent meshes look really cool 😎
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@webknossos
WEBKNOSSOS
2 months
Tuesday tips 🐾 for Beginners Did you know you can customize skeleton colors? Let WEBKNOSSOS choose a color for your tree or select your preferred shade by right-clicking and choosing 'Change Tree Color'. Check out the Youtube Playlist for more tips: https://t.co/QUwL4fgbSr
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@webknossos
WEBKNOSSOS
3 months
🌟Enhancement🌟 Only show selected segments. Toggle the “Hide unlisted segments” setting to pick which segments will be shown.
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@webknossos
WEBKNOSSOS
3 months
Tuesday tips 🐾 for Pros Did you know you can easily decide whether you want to overwrite while annotating? For example, when using the eraser, just press “Shift” to remove only the active segment. This shortcut also works for the brush and lasso! Check out the Youtube
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@webknossos
WEBKNOSSOS
3 months
🌟Enhancement🌟 Navigate WEBKNOSSOS faster with the new Command Palette. It allows you to streamline your workflow by quickly searching for tools, jumping to specific datasets, and accessing key features with just a few keystrokes. Activate with 'Ctrl/Cmd + P'
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@webknossos
WEBKNOSSOS
3 months
Tuesday tips 🐾 for Pros While using the brush, press and hold ‘Shift’ to temporarily activate the segment picker - or ‘Shift + Ctrl’ to switch to the eraser. Check out the Youtube playlist for more tips: https://t.co/nBpydzNWiP
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@webknossos
WEBKNOSSOS
3 months
Working with large datasets? Watch our workflow video to learn how to upload, organize with folders and metadata, set access permissions, and more - making data management seamless.
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@webknossos
WEBKNOSSOS
5 months
Tuesday tips 🐾 for Pros To move a bounding box, simply make sure the bounding box tool is activated, hold ‘Ctrl’ and drag the box to reposition it.
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@webknossos
WEBKNOSSOS
5 months
🌟Enhancement🌟 You can now edit segment or skeleton tree names by double-clicking their entry in the list - or change their names directly the metadata tab. Plus, you can now double-click on a segment in the segmentation to activate it!
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@webknossos
WEBKNOSSOS
5 months
Tuesday tips 🐾 for Pros Save your view settings as default! This way, when someone opens your dataset, they’ll see the exact same view as you. Check out the Youtube playlist for more tips: https://t.co/nBpydzNWiP
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@webknossos
WEBKNOSSOS
6 months
Carles Bosch (Francis Crick Institute) discussed at the vEM Data Challenges Symposium how correlative 2-photon and X-ray imaging uncovers neural computation in olfactory circuits, advancing our understanding of brain function. Unfortunately, there was an issue with the
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@webknossos
WEBKNOSSOS
6 months
🚀 Advancing Retinal Connectomics! Prof. David Berson from Brown University discussed strategies for large-scale segmentation in retinal connectomics at the vEM Data Challenges Symposium. 🎥 Watch the recorded session here: ( https://t.co/0djf8O6iST)
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