tskit-dev Profile
tskit-dev

@tskit_dev

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Updates from the tree sequence ecosystem.

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Joined September 2022
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@tskit_dev
tskit-dev
8 months
🎉 tskit 0.6.0 is released! 🎉.Thanks to our wonderful contributors, this is a bumper release. Read all about it at:.
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@tskit_dev
tskit-dev
2 years
RT @DrYanWong: How to load 1.27 million Covid genomes, and their complex ancestry, into your laptop in ~1 second. If you're into #bioinform….
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@tskit_dev
tskit-dev
2 years
🥳 tskit Python 0.5.5 and C 1.1.2 are released 🥳.This has the excellent random tree seeking by Kevin Thornton which makes hopping to a specific tree much faster. See the full release notes at
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@tskit_dev
tskit-dev
2 years
RT @pastramimachine: Tomorrow at 1PM EST I'll be leading an "Intro to stdpopsim" workshop as part of #ProbGen2023. Zoom info attached if pp….
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@tskit_dev
tskit-dev
2 years
RT @fleventy5: A new version of our slendr #rstats📦 is now on CRAN! Nothing dramatic, but you should upgrade if you can as it brings new co….
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@tskit_dev
tskit-dev
2 years
tskit can make fancy 3D plots for your talks!
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@DrYanWong
Dr Yan Wong
2 years
@tskit_dev 3D tree plots are now easy!
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@tskit_dev
tskit-dev
2 years
And finally Python3.11 support means that you can use tskit with the massive performance improvements from Python3.11! (@benjeffery).
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@tskit_dev
tskit-dev
2 years
"simplify" now has a "update_sample_flags" option for when you want to manage your own sample nodes. (@jeromekelleher).
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@tskit_dev
tskit-dev
2 years
"draw_svg" now has "max_num_trees" to prevent the accidental drawing of thousands of trees, and "canvas_size" for those vertical node labels. (@DrYanWong).
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@tskit_dev
tskit-dev
2 years
It's now quick and easy to get a tuple of a node's siblings. (@shingheizhan)
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@tskit_dev
tskit-dev
2 years
Tree sequences now know their min and max times, based on the nodes and mutations. (@shingheizhan)
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@tskit_dev
tskit-dev
2 years
Checking if a node was a root could be expensive. No longer with " (@DrYanWong)
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@tskit_dev
tskit-dev
2 years
🥳 tskit 0.5.4🥳.This first release of the year brings some useful features and support for Python 3.11. Thank you to our lovely community of contributors! 🧵👇.
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@tskit_dev
tskit-dev
3 years
We've got a new marketing expert for the tskit ecosystem:
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@tskit_dev
tskit-dev
3 years
"The ARG revolution in population and statistical genetics" @WilderWohns talk at @OfficialSMBE is now available at:.
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@tskit_dev
tskit-dev
3 years
RT @MarieGurke: Here is @tskit_dev trying to cheer up their readers. Love it!
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@tskit_dev
tskit-dev
3 years
🎉tsinfer 0.3.0🎉.This release brings a set of fixes and features, including a substantial improvement in date estimation when tsdate is used after tsinfer 0.3.0. Read all about it here:.
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@tskit_dev
tskit-dev
3 years
🥳tskit 0.5.3 is released!🥳.Available now on PyPI and conda. This point release contains some fixes and improvements. Full changelog: Thank you to all the contributors and the tskit community. ❤️.
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@tskit_dev
tskit-dev
3 years
📣"The ARG revolution in population and statistical genetics".👨‍🏫An invited keynote by @WilderWohns at the SMBEeverywhere symposium. 🗓️Sep 30th at 10am EDT. Details here:.
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