With David and the Baker Lab in the spotlight today, I wanted to share some insights into the @UWproteindesign and how it operates, a glimpse behind the curtain. I had planned to write this post-graduation, but now seems as good a time as any. (Got twitter blue free trial so this
BREAKING NEWS The Royal Swedish Academy of Sciences has decided to award the 2024 #NobelPrize in Chemistry with one half to David Baker “for computational protein design” and the other half jointly to Demis Hassabis and John M. Jumper “for protein structure prediction.”
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As a scientist, David is laser-focused on developing protein design as a platform. The moment a design goal becomes well-established, he pushes the lab to move on to new modalities. For example, for a long time, the goal was to make proteins that could bind to other proteins. But
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@paultkim_ipd There was a detail I was wrapping my head around for some time. Collaboration. How do you make that work? How do you start it, choose what's worth a group effort, what tools or forums allow it any insight in those directions is invaluable for one that considers this shift (me)
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@LChoshen There isn't really a formal process. People talk, bring up ideas to David, talk more, and eventually start working on a project.
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@paultkim_ipd Thank you for sharing! I’ve always been curious how David’s operation runs. If you don’t mind me asking, what are examples of cognitive load that are offloaded?
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@Soumees I think the best example is hiring Lynda Stewart to be the IPD's executive director: https://t.co/lMmi1sY9Rn She is crazy competent and effective (and a great person all around). She handles big picture lab development and future plans, external partnerships, funding, VC
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@gudrun_lotze I don't know as I joined the lab just two years ago but I assume resources were much more constrained
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@paultkim_ipd 'and have our own computational cluster with 919 GPUs and counting (primarily A100s, A4000s, A6000s, and L40s).' 🤯 and I'm here showing off the 8 GPUs we have, everytime someone comes to visit... 😅
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@paultkim_ipd It’s funny, i don’t believe we’ve ever met—different streams— but you managed to summarize my musings about my time in the Baker lab in this as well 🫶🏿 kudos
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@paultkim_ipd Thank you for the insights. For smaller labs difficult because of resources. Money makes the world go round and drives science.
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