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Annika Reads Profile
Annika Reads

@papersofnote

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Good readers make good writers. The #papers365 accountability account of a new PI (@Annika_Barber). Mastodon: @[email protected]

Joined June 2020
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@papersofnote
Annika Reads
3 years
Also. 🚨THIS IS PAPER #730!!!🚨 I really read, and tweetorialized, 730 papers in 730 days! Stay tuned for statistics and the top 20 favorites of 2021-22. You can see all the papers I've read here, with links to tweetorials:
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@papersofnote
Annika Reads
3 years
Human body temperature rhythms have been noted since the 1840s, but what about brain temp? Brain temp management is a keystone of neuroprotective ICU treatment, but turns out we don't know what temp your brain should be when! 😱 @neurocool to the rescue.
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@papersofnote
Annika Reads
10 months
I can't justify staying in this space. This account will be deleted within the next ~48 hours as soon as I have a current backup of my tweets for my personal notes. I'd love to see you on πŸ¦‹! Or email me your papers! Or see me IRL!.
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@papersofnote
Annika Reads
1 year
I don't log in here more than once every 6 months or so - find me elsewheres on the internets.
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@papersofnote
Annika Reads
1 year
If you missed hearing about papers - I got you! July special edition #papers365 on Bsky! Username is annikabarber.
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@papersofnote
Annika Reads
2 years
Annika is still reading, but mostly board books because she has a new grandbaby and is helping with grand baby #1! Will return to tweeting papers when I'm done with "But Not the Hippopotamus." πŸ¦›.
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@papersofnote
Annika Reads
2 years
Many animals show sleep *loss* during stress, but D. mojavensis sleeps more during nutritional stress and this seems to provide survival advantages. Mechanism TBD, but could be related to waste clearance or energy use. A cool new phenomenon to understand sleep evolution!.
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@papersofnote
Annika Reads
2 years
But *why* do desert flies sleep more? They turn out to be very resilient to food and food+water deprivation, with elevated sleep time upon nutrient deprivation. Survival during nutrient deprivation was correlated with increased sleep in the Mojave subspecies.
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@papersofnote
Annika Reads
2 years
What's different in desert flies? Mass spec analysis found elevated 5-HT and reduced octopamine in mojavensis compared to melanogaster, as well as differences in the number neuroanatomy of PDF+ clock neurons. Injection of wake-promoting octopamine reduced mojavensis sleep.
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@papersofnote
Annika Reads
2 years
D. mojavensis has sleep rebound (increased sleep time and intensity) after mechanical deprivation, but unlike melanogaster, shows light-dependent modulation of sleep.
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@papersofnote
Annika Reads
2 years
The four D. mojavensis subspecies all sleep more than melanogaster, with elevated sleep pressure, and reduced waking locomotor activity. It's not just because they're recently isolated strains, fresh-caught melanogaster from LA still sleeps less, similar to lab strains.
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@papersofnote
Annika Reads
2 years
Desert Drosophila have hard lives. and they sleep more! @party_mcfly_ and not-on-twitter colleagues in the Donlea lab show that D. mojavensis not only sleeps more than melanogaster, they *increase* sleep with food and water deprivation. πŸͺ°πŸŒ΅
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@papersofnote
Annika Reads
2 years
All this suggests that flies have miRNA regulated tuning of cotransmission in Glu- and GABA-ergic neurons, which may be dynamically regulated by environmental conditions, allowing neurons to rapidly change the magnitude or even sign (Glu & GABA are inhibitory, ACh is excitatory).
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@papersofnote
Annika Reads
2 years
Another piece of evidence used a split GFP on VGAT and VAChT, which would only assemble and fluoresce if both transporters were in the same vesicle and there is signal, which increases in older flies (30 days).
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@papersofnote
Annika Reads
2 years
Are there situations where ACh would normally be cotransmitted with Glu or GABA? A "translation-trap" experiment that turned on FLP mRNA transcription only when VAChT was transcripts, driving expression of FRT-stop-FRT-EGFP::VGluT and VGAT labeled neurons!.
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@papersofnote
Annika Reads
2 years
Glu- and GABA-ergic neurons regulates sleep in flies, and expressing the miR-190 sponge in resulted in sleep reduction and fragmentation, showing that there's a behavioral consequence to suddenly cotransmitting ACh with Glu or GABA.
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@papersofnote
Annika Reads
2 years
What regulates 3' UTRs? miRNAs, amongst other things, and miR-190 is predicted to bind to the VAChT 3' UTR. Expressing a miR-190 sponge in glutamatergic or GABAergic neurons resulted in expression of VAChT protein!.
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@papersofnote
Annika Reads
2 years
The authors cleverly notice that the Gal4s don't preserve the native 3' UTR, while the tagged transporters do! Could there be post-trx regulation? Using VGlut or VGAT-Gal4 to flip out a stop cassette for EGFP::VAChT yields no protein signal in adult brains. So possibly yes.
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@papersofnote
Annika Reads
2 years
If the Gal4-driven reporters colocalize, and you can do nuclear RNAseq and see that there's VAChT in both glutamatergic and GABAergic neurons, how come you don't get overlap when you actually put the tags onto VGAT & VACht, or VGluT and VAChT? Are they really cotransmitting?.
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@papersofnote
Annika Reads
2 years
I love a co-transmission mystery story, and @GriffithFlyLab delivers! Gal4 reporters suggest that glutamatergic and gabaergic fly neurons also express acetylcholine. But fluorophore-tagged transporter genes show no overlap. the secret sauce is microRNA.
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science.org
Cholinergic co-transmission in large populations of glutamate and GABA neurons in the Drosophila brain is controlled by miR-190.
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@papersofnote
Annika Reads
2 years
Just so y'all know, I also read fiction, and I keep a spreadsheet of that too. Unlike papers, I give everything book a 1-5 rating! πŸ”₯ (Or DNF if it's really bad).
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@papersofnote
Annika Reads
2 years
This imaging paradigm is looking at whole fetus PER2::LUC, and isn't describing whether the SCN is wired up and rhythmic. So I'm curious what happens after birth when the pups no longer have a maternal entrainment signal, and their own brain clock is probably not quite wired up.
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