Johanna Schachtl-Riess
@johsr2
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Postdoc @KronenbergLab (Genetic Epidemiology) | she/her
Joined July 2019
(1/3)🧬💻 Join the Genome Informatics team at the Institute of Genetic Epidemiology, Medical University of Innsbruck @imed_tweets🎓 I am seeking a PhD Student to work together on polygenic risk scores and genetic data analysis 🚀 https://t.co/fzsx8Q9TYq
genepi.i-med.ac.at
Polygenic risk scores (PRS) represent a novel approach in the field of genetics, to improve understanding of complex traits and diseases influenced by multiple genetic factors. Unlike single-gene...
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nf-gwas is out in NAR Genomics and Bioinformatics 🎉! Performing highly parallelized and reproducible #GWAS analysis 🧬🔍📊 Looking forward to pushing the #Nextflow pipeline together with @seppinho, @johsr2 and @SilviaDiMaio4 to the next level 🚀 https://t.co/pBEpthhmgP
academic.oup.com
Abstract. Genome-wide association studies (GWAS) are transforming genetic research and enable the detection of novel genotype-phenotype relationships. In t
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Happy to share our newest GWAS on PCSK9 which has been published open access in Atherosclerosis. We identified 5 novel loci for PCSK9 concentrations. See more: https://t.co/H5vwF2g3hr
#PCSK9 #Atherosclerosis @society_eas @azinkh96 @ATHjournal @imed_tweets
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.@nextflowio summit run successfully ✅ the nf-test and nf-gwas team says 🙏 for the warm welcome!! @lukfor @johsr2 @SilviaDiMaio4
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@SeqeraLabs latest “Pipeline In The Spotlight'' is https://t.co/JVFnkKkv9C, a @nextflowio pipeline to perform biobank-scale genome-wide association studies on HPC or Cloud. Analyze thousands of phenotypes in parallel and explore your final results interactively in a web browser.
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📢 New #GWAS preprint! Excited to share the preprint of nf-gwas, a #Nextflow pipeline to run biobank-scale GWAS analysis. awesome cooperation with @lukfor, @johsr2 and @SilviaDiMaio5
https://t.co/HxKUgA1yzu 1/n
biorxiv.org
Motivation Genome-wide association studies (GWAS) in large biobanks are transforming genetic research and enable the detection of novel genotype-phenotype relationships. In the last two decades, over...
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Our GWAS Nextflow pipeline now supports gene-based testing functionality (provided by regenie) and runs on all major cloud providers! Code + Docs: https://t.co/nugjQOv0L8 1/2 (pls see next tweet for credits!)
genepi.github.io
nf-gwas: A nextflow pipeline to perform genome-wide association studies (GWAS) using regenie.
⭐⭐ Pipeline release ⭐⭐ nf-gwas: A Nextflow pipeline to run genome wide association studies (GWAS). #gwas #Bioinformatics #nextflow 👇👇
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Excited for the remaining two days #EASCongress2022 #togetheratEAS2022
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Excited to see my 1⃣st first-author paper out in @ATHjournal: 🧬 It's about the two faces of a well-known #lipoproteinA missense variant, rs41272110 (p.Thr3888Pro), and its SNP interaction with the KIV-2 4925G>A 🧬 Read more below ⬇️ and stay tuned for the twittorial 💬
The 🆕 study by @RGrueneis &Coll emphasizes the complexity of the genetic regulation of Lp(a) and the importance to account for genetic subgroups in Lp(a) assoc studies https://t.co/tZlIztq7xd
#CardioTwitter #EASCongress2022 @SilviaDiMaio4
@seppinho @lukfor @stncsn @KronenbergLab
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It still feels unreal but I am #PhDone 🙊 Thank you to everyone who celebrated with me yesterday including @KronenbergLab @azinkh96 @SilviaDiMaio4 @RGrueneis @stncsn @seppinho @lukfor @AmstlerStephan 🥳
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Excited to announce that our PCSK9 paper is now published @CJASN 🥳 @KronenbergLab
Proprotein convertase subtilisin/kexin type 9 (PCSK9) is a key regulator of lipid homeostasis. This study found a significant association between higher PCSK9 concentrations and risk of cardiovascular disease https://t.co/FbrY2FGy3F
@azinkh96
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Need to run a GWAS? Consider running it with the nf-gwas pipeline built by @lukfor and @seppinho! It has many advantages like an automated report 🥳 Head over to @seppinho for details 👇You never used the command line before? Here is my beginner's guide 🤓
genepi.github.io
nf-gwas: A nextflow pipeline to perform genome-wide association studies (GWAS) using regenie.
⭐⭐ Pipeline release ⭐⭐ nf-gwas: A Nextflow pipeline to run genome wide association studies (GWAS). #gwas #Bioinformatics #nextflow 👇👇
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Making @nextflowio pipelines testable 🚀 @seppinho and I are happy to announce a first preview version of nf-test, a simple and elegant test framework to describe the expected behaviour of pipelines. https://t.co/EcSDYeopH8
askimed.com
Askimed is the next-generation eCRF system designed for medical studies in the cloud.
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Excited that our paper is published in @jlipidres 🥳
"Lysis reagents, cell numbers, and calculation method influence high-throughput measurement of HDL-mediated #cholesterol efflux capacity" @imed_tweets @johsr2 @StefanCoassin @KronenbergLab
https://t.co/RxfBtmJ5Pi
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So happy that our paper is now out there and big thanks to everyone #teamwork Head over to @StefanCoassin for a Tweetorial on our main findings
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New work from our lab lead by @SilviaDiMaio4. UKBB data in action.
Does #lipoproteinA modify #Covid19 risks? @KronenbergLab @SilviaDiMaio4 finds that high Lp(a) severely enhances ischemic heart disease risk in case of a COVID19 infection, but does not modify infection susceptibility and thrombosis risk in #UKBiobank. https://t.co/yPDHwS0tJq
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