The Tweet Of GMOD
@gmodproject
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The Generic Model Organism Database project: open-source software for genome-scale biological data.
Global
Joined November 2012
(2/2) Please steer them my way. My resume and publication list are on my personal website:
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This is Scott; my contract working on GMOD related tasks (including JBrowse, Chado, and Tribal) and other projects like https://t.co/lubvU928wC and https://t.co/12UGs0slPE is likely to come to and end soon. If you know of anybody looking for help with things like this, (1/2)
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Frontend Developer position Required to apply @ https://t.co/TDiM42rt8T -Responsible for designing, developing, testing, & debugging responsive web applications -Using #javascript , HTML, CSS, GitHub, Jekyll & Liquid #JobOpening #Hybrid #FrontEndDeveloper
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Did you know that you could get variant analysis, methylation and phasing in a single data analysis workflow? #EPI2ME human variation workflow, best practice @nanopore data analysis, with great reports and integrated genome browser. #nanoporeconf
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I created a Colab tutorial that checks if a gene/transcript ID has an associated crystal structure, checks if related proteins with associated crystal structures are available, and then compares those to a de novo structure prediction: https://t.co/P24WrJzhpR
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The application even includes jbrowse2 for no fuss viewing of read alignments straight. Analysis a manual review in a single application. https://t.co/DyQtEgdj84
jbrowse.org
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(Geez, squeezing the description of this figure into 1000 characters was hard!)
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I am happy to announce that the #JBrowse2 paper has be published in Genome Bio. There is lots of cool stuff: synenty, structural variation, plugins, multi chromosome and multi genome views, a graphical configuration editor, a desktop and easy-to-embed apps
link.springer.com
Genome Biology - We present JBrowse 2, a general-purpose genome annotation browser offering enhanced visualization of complex structural variation and evolutionary relationships. It retains core...
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During the #Soybean Breeders Workshop the SoyBase team asked the workshop attendees to vote for their favorite https://t.co/ieSvXJWfDc tool. The word cloud was created from the community's votes. #soybeans #plantbreeding #research #GenomeBrowser #BLAST
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It's that time again: I'm going to start bugging people for letters of support for the @usejbrowse project. If you have time and are a #JBrowse user, please consider writing a letter. JBrowse is a big part of many genomics projects, and we want to make sure it continues to grow.
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My friends at CIRAD Montpellier, France are looking for bioinformatics web developer familiar with #GMOD tools (@TripalProject @galaxyproject, @usejbrowse) to work on a rubber and palm tree genome project:
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To go along with the #JBrowse2 tutorial at #PAG30, we also have three talks by JBrowse folks: @rbuels gave an intro: https://t.co/GaR0kS7RrM
@cmdcolin gave an overview of features: https://t.co/1lQF76wcXN Caroline Bridge talked about the plugins:
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At #PAG30 earlier this month, we presented a hands on #JBrowse2 tutorial, where the attendees logged into a server, ran through setting up a JBrowse 2 instance and added a lot of data, including #synteny and #structuralVariation
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Darn it, I forgot to include useful things like time and location (I've gotten used to longer posts elsewhere so was worried about keeping it brief!): the session is at 4:00 in Town & Country D (the computer demo room)
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Join the #tripal folks for their #PAG30 session: https://t.co/L5vbAZPtfA Topics include v4, biocuration, #jbrowse integration, intro to https://t.co/4uAWpTA6jl , and a retrospective by @FicklinStephen
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Also available in #bioconda :-) Thanks @usejbrowse team!
JBrowse v2.2.0 released, featuring alignments track performance improvements, totally revamped documentation on our website, and lazy loading of assemblies allowing improved scalability for loading many genomes in a single config! See release notes: https://t.co/BFMLG4vlSQ
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