Jeff Calhoun 🧬🌈 Profile
Jeff Calhoun 🧬🌈

@calhoujd

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Research Assistant Professor with Gemma Carvill (@CarvillLab). Focus: epilepsy genetics. Twin. Ace cat dad. Occasional writer. I am only an egg. He/him.

Chicago, IL
Joined March 2012
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@calhoujd
Jeff Calhoun 🧬🌈
1 year
In this preprint, we present two complementary approaches for resolving variants of uncertain significance (VUS) in the gene TSC2. VUS are a common issue for individuals who receive genetic testing for a suspected genetic condition. Resolving VUS is important! 1/12.
@biorxiv_genetic
bioRxiv Genetics
1 year
Multimodal framework to resolve variants of uncertain significance in TSC2 #biorxiv_genetic.
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@calhoujd
Jeff Calhoun 🧬🌈
4 days
RT @SAOscience: "Because aspects of human brain development are difficult to model in animals," @hcmefford & team developed brain organoids….
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@calhoujd
Jeff Calhoun 🧬🌈
10 days
RT @rebeccasugar: If you missed our concert for @TrevorProject it's now available to watch (link in reply) and the donation link is still l….
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@calhoujd
Jeff Calhoun 🧬🌈
18 days
@PeterCrino Also, Jacob and Ryleigh are making the trip to Chicago in spirit to act as a constant reminder of the importance of continuing to study TSC1 and TSC2
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@calhoujd
Jeff Calhoun 🧬🌈
18 days
As a slight tangent, I want to thank @PeterCrino for encouraging me to apply for the AES JIA award back circa 2021 or so. Their generous funding is the reason I was able to join the TSC field. Planning to stick around as long as possible!.
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@calhoujd
Jeff Calhoun 🧬🌈
18 days
"The TSC brain is an inflamed brain", and there is a need to harmonize omics data from different labs to facilitate a meta analysis that might yield novel druggable targets.
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@calhoujd
Jeff Calhoun 🧬🌈
18 days
Peter Crino somehow managed to give a whirlwind overview summarizing the state of the field in terms of epileptic networks and cellular anatomy. An incomplete list of take-home messages: microtubers are under studied, slice ephys needs to be done on more resected tissue,.
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@calhoujd
Jeff Calhoun 🧬🌈
18 days
Brendan Manning gave an incredible talk on metabolism in the context of mTOR pathway dysregulation and rapamycin treatment. I think the field, myself included, need to think a lot more about cellular metabolism in addition to cellular processes we tend to focus on.
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@calhoujd
Jeff Calhoun 🧬🌈
18 days
Rebecca Ihrie gave a tour de force talk that i can't possibly do justice summarizing on this platform. So many interesting insights ranging from proteomics, phospho-proteomics, and epigenetics. Highly recommend checking out the recent papers from her lab.
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@calhoujd
Jeff Calhoun 🧬🌈
18 days
Tommy Li presented his work on the two hit model that he studied in both organoids and clinical samples. Particularly interesting work using the new serial imaging technique to stain 1 sample for many targets. Lots of fascinating mechanistic insights!.
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@calhoujd
Jeff Calhoun 🧬🌈
18 days
Morgan Moser presented on gene therapy approaches. Very cool method to miniaturize a TSC2 expression construct to fit within the packaging limits of AAV delivery platform. I'll be keeping πŸ‘€ peeled to see where this work goes over the coming years!.
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@calhoujd
Jeff Calhoun 🧬🌈
18 days
Aynara Wulsin presented on using standard terms derived from the electronic health record to enable natural history study, genotype phenotype correlation, and other studies in TSC. This method could prove very fruitful, but needs to overcome bottleneck of manual curation of EHR.
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@calhoujd
Jeff Calhoun 🧬🌈
18 days
As someone who has trained in mostly germline rare genetic epilepsies, the idea that a mosaic variant of quite low frequency can give rise to same or similar phenotype as a germline variant is very interesting and will be something i will be pondering going forward.
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@calhoujd
Jeff Calhoun 🧬🌈
18 days
I really enjoy Clara Chung talking about deep sequencing with a gene panel. It turns out that many, though certainly not all, no mutation identified (NMI) cases are actually mosaic and require 500+X coverage to detect. Sometimes you even need affected tissue like a tuber to solve.
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@calhoujd
Jeff Calhoun 🧬🌈
18 days
Lots of great talks were given at this year's conference. I'll highlight a few, please bear in mind that these were of particular interest to me and my inherent biases and by no means exhaustive.
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@calhoujd
Jeff Calhoun 🧬🌈
18 days
First, the TSC community is very welcoming. I am still quite new, and everyone has been very kind and encouraging. I am heading home feeling very inspired to redouble my efforts to help resolve variants of uncertain significance (VUS) in TSC2.
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@calhoujd
Jeff Calhoun 🧬🌈
18 days
The 2025 TSC International Conference organized by the amazing @tscalliance just wrapped up. An absolutely incredible conference, so much science packed into two days. In this thread I am going to post some thoughts from the conference. 1/?.
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@calhoujd
Jeff Calhoun 🧬🌈
19 days
RT @rebeccasugar: Please join us from 7-9pPST JUNE 29 for a free virtual concert fundraiser for @trevorproject 🧑streaming live from my inst….
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@calhoujd
Jeff Calhoun 🧬🌈
20 days
RT @curechd2: πŸŽ‰Coalition to Cure CHD2 has granted €100,000 to Dr. Nael Nadif Kasri to advance personalized medicine for CHD2-related disord….
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@calhoujd
Jeff Calhoun 🧬🌈
1 month
RT @plasmidsaurus: This is exactly what happens inside our sequencing machines. 😌
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@calhoujd
Jeff Calhoun 🧬🌈
1 month
RT @YannCPhD: Excited to share our latest study from the Manning Lab. We have developed and characterized a novel mouse model lacking the f….
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