Sam Payne
@byu_sam
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Bioinformatics professor at BYU. Interested in 'omics and awesome science.
Joined May 2018
If #TeamMassSpec is still here, I've posted some new tutorials for computational MS at my git repo.
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A fun conference I'm helping to organize. Please cosider attending. Theme is: Data-Driven Discovery: Harnessing the power of AI to transform health.
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#teamMassSpec. Iβm so excited to share our work on improving quantification through FDR controlled peptide identity transfer (MBR). Funded by @cziscience and @NIGMS.
Improved detection of differentially abundant proteins through FDR-control of peptide-identity-propagation
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RT @NCAATrackField: π ππππππππ πππππππππ π. BYU are your 2024 DI Womenβs Cross Country National Champions. #NCAAXC
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RT @Smith_Chem_Wisc: Improved detection of differentially abundant proteins through FDR-control of peptide-identity-propagation https://t.cβ¦.
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whenever i review grants, I wish I could sit down and chat with the authors. Maybe go to a long lunch where they have bbq and a whiteboard. Science is so awesome, I just have too many questions.
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would any scientific editors be interested in having students be 'replication and reproducibilty reviewers'? For any/every submission that involves computation, we have students take the publicly available source and attempt to reproduce the results in a manuscript. Thoughts?.
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I loved this devotional. βHe does demand for us to participate. For us to do the thing that we donβt necessarily need Him for. So that He can do the thing that only He can do. The miracle part. He does involve us in the process. isnβt that so gracious of Himβ.
βThe Chosenβ creator Dallas Jenkins told Brigham Young University students on Tuesday, October 29, 2024, to embrace failure and trust in Godβs plan for them. His forum message to a packed Marriott Center audience centered on his own experiences with failure. βWhether in failure
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What effect will chatGPT have on the quality and clarity of scientific publications?.
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Students work in teams. so in addition to the intellectually expanding work of science, they also have to learn the soft skills of working in teams. Delegation, communication, compassion. /3.
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Projects have to be real - not rehashs of something pubished, not trivial projects with a assured answer in a homework key, and realistically fun science that can be done in one semester. /2.
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One of the most demanding and most rewarding parts of my job is teaching our Bioinformatics Capstone. The course is an experiential learning opportunity for undergraduate students to do real science. That requires me to create 6-8 real projects every year. /1.
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Dear Science Journals,.putting a data availability and code availability statement after the discussion section is strange. Why not put them where they belong (at the top of the methods section)?.
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#TeamMassSpec - what is match-between-runs for DIA? The motivation for MBR is non-fragmented ions in DDA. But in DIA, everything is fragmented. So what's the purpose? Do you just recover poorly scoring ions where the fragmentation didn't pass the FDR cutoff?.
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#TeamMassSpec - what are people's favorite population scale proteomcis datasets? I'm a big fan of CPTAC, but what others do people use?.
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RT @JProteomeRes: LAST CALL β This Special Issue showcases the latest novel and significantly updated software tools, web applications, andβ¦.
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