
biorxiv_biochem
@biorxiv_biochem
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Joined March 2024
Human Dicer1 hotspot mutation induces both loss and gain of miRNA function https://t.co/ctq6Ns7aJk
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biorxiv.org
The core miRNA biogenesis enzyme Dicer1 sustains recurrent mutations in cancer that compromise its RNase IIIb domain, which cleaves 5p arms of pre-miRNA hairpins. However, the lack of knockin models...
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A Novel {psi}-χ Fusion Protein for Unravelling the Contributions of χ to DNA Replication and Repair https://t.co/qmfmIp3IHx
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Faithful DNA replication in Escherichia coli requires the DNA polymerase III holoenzyme (DNA pol III HE) and its clamp loader complex, which couples processive DNA synthesis with β2 clamp loading....
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Minimal Perturbation of Activation Loop Dynamics Rewires KinaseSignaling https://t.co/oTTNko2iOv
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Enzymes are central to life, with their catalytic activity often shaped by the dynamic conformations of regulatory loops. In hub enzymes such as tyrosine kinases, the activation loop critically...
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Substrate recognition and cleavage by mucin degrading O-glycopeptidases from the gut microbe Bacteroides caccae. https://t.co/B6ZUxnHkko
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biorxiv.org
O-glycopeptidases are enzymes that hydrolyze the peptide bonds in glycoproteins by a mechanism that involves specific recognition of O-linked glycans on the substrate. Bacteroides caccae , an...
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Cryo-EM structure of shutdown human non-muscle myosin 2A https://t.co/DPZSsuveeU
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biorxiv.org
Determining the high-resolution structure of the widely expressed non-muscle myosin 2A (NM2A), in its dephosphorylated shutdown state, is important in understanding its regulation and disease roles....
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Reaction kinetics of procainamide dye derivatization of N-linked glycans to enable robust process analytical workflows for ... https://t.co/fMsoqZMFZa
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biorxiv.org
N-glycosylation is a post-translational modification of proteins that represents a critical quality attribute (CQA) for therapeutics like monoclonal antibodies (mAbs), directly affecting drug...
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Pandemic Legacy: Medical Facemasks as a Potential Source of Marine Microplastic? https://t.co/TOdAuO7KCh
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Understanding the main sources of microplastic pollution is key towards developing efficient measures to reduce microplastic loadings to marine waters. Yet identifying the main sources of marine...
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CYP46A1 Activation Improves Retinal Neovascularization in a Mouse Model of Retinopathy of Prematurity https://t.co/dKRJPEeTPv
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Background: Previous studies have shown the metabolic and regulatory significance of CYP46A1 in the adult retina; however, its role in the developing retina is unknown. Here, we evaluate CYP46A1...
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The Recombination Triplet State in the Far-Red Light Adapted Photosystem II is Located at the ChlD1 Site and Resides on the Red-Most ... https://t.co/T49RgvZnxm
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The energetic limits of Photosystem II (PSII) photochemical reactivity required reconsideration after the discovery of far-red light acclimation responses in cyanobacteria. Insights on PSII functio...
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Rad54 separation of function mutation highlights unique roles during homologous recombination https://t.co/oGIYxPLmLz
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Homologous recombination (HR) is a DNA repair pathway that utilizes a template-based approach to repair double-strand breaks within the genome. Template utilization requires the exchange of individ...
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Breaking Barriers: Transitioning from X-ray Crystallography to Cryo-EM for Structural Studies of ATAD2B https://t.co/ZVTDntW1BF
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Cryo-electron microscopy (cryo-EM) has transformed structural biology by enabling near-atomic resolution of large macromolecular complexes without the need for crystallization. Here, we describe our...
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ZNFX1, an immunoregulatory RNA helicase and E3 ubiquitin ligase, assembles into pleiomorphic polymers https://t.co/irnEHoIUUX
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ZNFX1 is an SF1-family RNA helicase essential for innate immunity. Patients with ZNFX1 mutations experience recurrent infections, yet the underlying mechanism remains unclear. We determined cryo-EM...
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Deciphering Membrane Pore Formation Mechanisms of Plasmodium falciparum Perforin-Like Protein 1 (PfPLP1) https://t.co/GEWF7qF7sK
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biorxiv.org
Membrane Attack Complex/Perforin (MACPF) domain proteins are β-pore forming toxins (β-PFTs) involved in the pathogenesis of various organisms. Among them, Perforin-like proteins (PLPs), produced by...
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ConforFold Recovers Alternative Protein Conformations Beyond MSA Subsampling https://t.co/Xw20luTCQY
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Conformational changes underlie many aspects of protein function, yet current structure prediction tools remain limited in their ability to systematically sample structural ensembles. Here, we...
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Structural basis for gating inhibition by the cytoplasmic domain in HCN1 channels https://t.co/fkJQvgQOwJ
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Hyperpolarization-activated, cyclic nucleotide-gated (HCN) channels generate rhythmic electrical activity in cardiac and neuronal tissues, with isoform-specific cAMP sensitivity remaining poorly...
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Interface-Sensitive Epi-Coherent Anti-Stokes Raman Scattering Microscopy for Imaging Cell Adhesion Dynamics https://t.co/likfixIhzK
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Studying cell adhesion dynamics is critical to understand how cells interact with the extracellular matrix and how they migrate. Conventional microscopy techniques for interfacial studies either lack...
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CNPY4 is a Lipid-Binding Regulator of Sphingolipid Homeostasis https://t.co/9XG4jXxcle
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Sphingolipids function both as signaling molecules and as organizers of cell membranes, and their dysregulation has been linked to cancer, metabolic disorders, and neurodegeneration. A central node...
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Paralogs with distinct phase behaviors broaden the in vivo stress response range of condensates https://t.co/Pc3eXaTLeE
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Paralogs are widespread, but their physiological roles are often masked by redundancy. H-NS, a nucleoid-associated protein in Gram-negative bacteria, typically coexists with paralogs such as StpA,...
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High Throughput Screening Identifies a Small Molecule Trafficking Corrector for Long-QT Syndrome Associated KCNQ1 Variants https://t.co/0Mc56id8GI
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biorxiv.org
Congenital long QT syndrome (LQTS) promotes risk for life-threatening cardiac arrhythmia and sudden death in children and young adults. Pathogenic variants in the voltage-gated potassium channel...
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The evolution and mechanistic versatility of the bacterial NADH dehydrogenases type II https://t.co/Pw3YvSM46b
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Type II NADH dehydrogenases (NDH-2s) are accessory enzymes of the bacterial electron transport chain (ETC). While they functionally overlap with Complex I, their main role is not proton translocation...
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