ModularImageAnalysis (MIA)
@_MIAnalysis
Followers
62
Following
5
Media
5
Statuses
25
MIA is a Fiji plugin which provides a modular framework for assembling image and object analysis workflows. Developed @wbif_bristol by @_sjcross
Joined April 2022
This version also allows any LUTs installed in ImageJ to be applied to images and for different composite modes (min, max and invert) to be used via ShowImages.
0
0
0
Both new modules available in the Images > Transform menu.
1
0
0
MIA version 1.7.0 is now out via the ImageJ updater. This adds modules for converting large images to tile stacks and converting them back. These support tile overlap with linear gradient mixing.
1
0
0
RT @_sjcross: The @RoyalMicroSoc Journal of Microscopy special issue for Data Analysis In Microscopy (DAIM) is now out and includes the pa….
onlinelibrary.wiley.com
The Journal of Microscopy is the oldest journal dedicated to the science of microscopy, publishing the latest advances in microscopy techniques and novel areas of application.
0
14
0
You can find out more about Segment Anything at
segment-anything.com
Meta AI Computer Vision Research
0
0
0
You can find out more about the SAMJ plugin at
github.com
An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code. - segment-anything-models-java/SAMJ-IJ
1
0
0
Note: The first time Segment Anything is used it can take a few minutes while the model is downloaded and installed.
1
0
0
To speed things up further, "Manually identify objects" can now be set to automatically add new objects as soon as they're selected. This can be controlled from the object selection window.
1
0
0
It's best to set "Default selector type" to "Single point", so clicking on an object will cause Segment Anything to automatically find it.
1
0
0
To enable, just update MIA to the latest version and add the "SAMJ" update site. Following this, "Manually identify objects" will have the parameter "Enable Segment Anything".
1
0
0
MIA version 1.6.9 is now available via the ImageJ Updater. The big new feature is compatibility with Meta's Segment Anything model, which is integrated using the fantastic SAMJ plugin for ImageJ. It's now possible to simply click objects in "Manually Identify Objects".
1
2
4
As with all example workflows, each module has a detailed description that can be accessed by going to View > Show notes panel.
0
0
0
New example workflow at This one details how object relationships in MIA can be used to classify isolated and overlapping DNA molecules from AFM images.
1
1
3
Our shiny new website is now live thanks to the skills of @jdjfisher_. The site includes guides to using MIA as well as complete documentation for all modules. Speedy documentation search is courtesy of the excellent @algolia. Check it out at
0
2
2
RT @_sjcross: I'm pleased to share MIA (@_MIAnalysis) in its published format. The paper describes MIA using a series of real-world exampl….
0
15
0
Image sequence is a timelapse of yolk syncytial layer (YSL) nuclei from the Cell Image Library (.
0
0
0
This example introduces the "Spot detection" and "Track objects" modules, which both use MIA's TrackMate integration. Example also demonstrates parent-child relationships in context of tracked objects.
1
0
0
New example workflow for tracking objects added to
1
1
1
We're proud to now be an official forum Community Partner. We can be found on there with the tag modular-image-analysis
0
2
5